Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2067 ATGAAAGATCACCCGACTCCATCGCATTCTGTTTCTTCGGCTGTTCCATCTACTTTGCAGCATTTAAAGGAGATAGCATCAATTATCGAGACCGGTTCATACTCTAAGGAAGTTCGTAGAATTGCTCGTGCCGTACGCCTTACAATTGCTTTGAGGCGCAAATTGACTGCATCGGTGGTCTCGTCTTTTATCGATTACGTTGTTAGTCCGGGTTCTGAGGCTCATGCCAGATTGTCTGCCTATCTTCCTAACGAGGATGATCATGAGATGGAAGTGGATAGTGCAACATCTACTGTTCATTCCTCAGCGAAACACTTATTGCCGGAGCTAGAAATCTACTGTTACTTGCTCATACTACTTTTTCTGATTGATCAGAAGAGTTACAAAGAGGCCAAAGCTTGTTCCTCAGCAAGCATTGTCCGGTTGAAGAACCTGAACAGAAGAACTGTTGACGTTATTGCATCCAGACTATACTTTTATTATTCATATAGTTATGAGCTTACTGGAGATCTTGCTGAAATTCGGGGCAATCTTCTTGCATTGCATCGGATTGCCACCCTGCGCCATGATGAGTTGGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTATCTCCACTACAACCTATATGACCAGGCAGAGAAGTTGAGGTCTAAGGCGCCGCGATTTGAAGCACACTCAAACCAGCAGTTTTGTCGATATCTCTTCTACCTCGGGAAGATTCGGACAATTCAGTTGGAGTACACCGATGCGAAAGAGTCTCTTCTGCAGGCTGCTCGAAAAGCTCCAGTTGCAGCTCGTGGTTTTCGAATTCAATGTAATAAGTGGGCTGTAATAGTGCGTTTGTTGTTGGGAGAAATACCTGAGAGGACTATCTTTATGCAGAGAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAGCTTACAAATGCAGTCCGGATTGGAGACCTGGAGCTGTTTAGGAATGTTGCGGACAAGTTTGCTACCACCTTCAATACGGATGGAACTCATAATTTGATTGTTCGGCTGCGGCATAATGTCATCAGGACTGGTTTACGAAACATTAGCATTTCTTATTCTCGTATCTCGCTTGCTGATGTAGCTCAAAAATTGAGGTTGAACTCTGCAAACCCTGTTGCAGATGCTGAGAGCATTGTAGCCAAGGCCATCCGAGATGGGGCAATTGATGCTACATTGGATCATGCTAATGGGTGGATGGTATCTAAGGAAACGGGAGATATTTATTCCACAAATGAGCCTCAGTTGGCATTTAATTCTCGGATTGCCTTCTGTCTTAACATGCACAATGAGGCCATTCGGGCTCTGCGTTTCCCCCCAAACACTCAGAATGAGAAGGAAAGTGCTGAGAAGAGGAGAGAAAGGCAGCAACAAGAGCAAGAACTGGCTAAACATATTCAAGAGGAGGATGATGATGATTTCTGA 1446 0.4426 MKDHPTPSHSVSSAVPSTLQHLKEIASIIETGSYSKEVRRIARAVRLTIALRRKLTASVVSSFIDYVVSPGSEAHARLSAYLPNEDDHEMEVDSATSTVHSSAKHLLPELEIYCYLLILLFLIDQKSYKEAKACSSASIVRLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTIFMQRGMEKALRPYFELTNAVRIGDLELFRNVADKFATTFNTDGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLNSANPVADAESIVAKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAIRALRFPPNTQNEKESAEKRRERQQQEQELAKHIQEEDDDDF 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2067 481 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 9 472 - -
Glsi08g2067 481 SMART PCI/PINT associated module 168 339 - -
Glsi08g2067 481 Coils Coil 448 475 - -
Glsi08g2067 481 MobiDBLite consensus disorder prediction 445 481 - -
Glsi08g2067 481 Gene3D - 238 431 - -
Glsi08g2067 481 Pfam PCI domain 305 410 IPR000717 -
Glsi08g2067 481 Pfam Proteasome regulatory subunit C-terminal 414 480 IPR013586 GO:0000502|GO:0030234|GO:0042176
Glsi08g2067 481 MobiDBLite consensus disorder prediction 451 474 - -
Glsi08g2067 481 SUPERFAMILY "Winged helix" DNA-binding domain 340 415 IPR036390 -
Glsi08g2067 481 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 339 432 IPR000717 -
Glsi08g2067 481 ProSiteProfiles PCI domain profile. 233 414 IPR000717 -
Glsi08g2067 481 FunFam 26S proteasome non-ATPase regulatory subunit 3 114 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2067 Glsi-ChrGlsi08 14501358 14504897 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0106 10 785825 789352 Glsi08g2067 08 14501358 14504897 CCT
Glsi08g2067 08 14501358 14504897 Glsi08g2067 08 14501358 14504897 ECH