Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2054 ATGGGCCCACTAGCCTCCGGTCACATGATCAAAGATGGTCTATTTGAACTACAAAATCGGCATAGAGTTACTTTCCCAAAAGGGAGTTATGGAGCCGAGTTTTTGGTTGGCCTTGTTAAGCTTTCTCATTTATTAGTTTCCCATGGATTCAGAGTTGTGGGAGTGCATCCGCCATTTACAATGGAAGAACTGGAGCTTACCTCCCATTCGGCTTCACAGCAGGACCAACCCTCCAAAGCAACCAAGACCGAGACTGTTTCCTTCTTTGGCTTGTTTGCTGCTGCTGATACAATTGACTATGTCTTAATATTGTTCGGAAGCGTGGGTGCGTGCCTCCATGGCGCTGCTCTTCCTGTATTCTTTGTTTTGTTTGGCCGTATGATTGACTCTTTGGGACATCTTTCTAAGCATCCTCACAAGTTGTCGTCCACGGTTTCTGAGCATGCTTTGTACTTGGTGTATCTCGGACTCGTTGTTCTGGTGTCAGCTTGGATAGGTGTTGCATTCTGGATGCAAACAGGGGAGAGGCAAACAGCTCGTTTGCGCTTAAAGTATCTGCAGTCAGTTCTAAAAAAGGATATTAATTTCTTTGACAATGAAGCCAGAGATGCTAATATCCTTTTCCACATTTCGAGTGACGCAATATTGGTACAAGATGCAATCGGTGACAAGATTGGCCACGCTATACGTTACCTTTCCCAATTCATTGTTGGATTTGCCGTTGGATTTACATCAGTATGGCAGCTCACTCTACTCACCTTGGCTGTTGTTCCATTAATAGCTATAGCAGGGGGAGCTTATACTATAACTATGTCTACCTTATCAGAAAAGGGTGAAGCAGCTTATGCCGAAGCTGGGAAGGTGGCAGAAGAGGTAATTTCTCAAGTTCGTACTGTGTACTCATTTGTAGGAGAAGATAAGGCAGTTGCCTCATACTCCAAATCACTAGATATTGCTCTGAAACTGGGCAAGAAGAGCGGTTTTGCGAAAGGAGTTGGGGTAGGCTTGACATATGGGTTGTTGTTTTGCGCTTGGGCATTGCTTCTCTGGTATGCTAGCATACTTGTGAGACATCATAAAACAAATGGGGGGAAAGCATTCACAACTATCATTAATGTCATCTTTAGCGGATTTGCTCTCGGTCAGGCTGCTCCAAGCCTTGCTTCCATTGCTAAAGGGCGTGCAGCTGCTGCCAGTATCATTAACATGATTGCATCAGTTTCAAACAATTGTATAAGTTTGGACAAGGGGACTGTTGTGCCACAATTGGCAGGGGAAATTGAATTTTGTGAGGTCTGCTTTTCTTACCCCTCAAGATCCCACACGGTCTTTGAAGATTTGACCTTCTCAGTAAGTTCCGGGAAGACTGTCGCAGTTGTTGGTCCTAGTGGTTCAGGGAAGAGCACAATCATTTCCATGATGCAACGATTCTATGACCCCACTTCAGGTAAGATACTGTTGGATGGACATGACTTGAAGAGTCTTCAATTGAAATGGCTGAGGGAACAAATGGGTTTGGTTAGTCAAGAACCAGCACTATTTGCCACAACAATATCTGGAAACATTTTATTGGGAAAAGAAGATGCAGACATGGATCAAATCATACGAGCTGCCAAAGCTGCAAACGCTCATTCTTTCATTCAAGGATTACCCGATGGTTATCACACTCAGGTTGGCGAGGGTGGCACTCAACTTTCAGGAGGGCAAAAGCAGAGAATTGCTATAGCAAGAGCGGTGCTCAGAAACCCAAAAATATTACTTCTAGACGAGGCCACCAGTGCCCTTGATGCAGAATCAGAGCTCATTGTTCAGCAGGCACTGGAAAAATTAATGTCGAACCGGACTACAATAATCGTTGCGCACCGATTATCTACCATTCGCGATGTAGATACAATCCTTGTCTTGAAGAACGGTCAGGTTGTTGAAAGTGGGACTCATTTGGAATTGATGTCAAAAAATGGCGACTATGTGAGCCTGGTGAGCTTGCAGGCATCAGAAAACTCGACAAGTTCTAGCACAATTTCTCGCTCTGGGAGTTCAAAAAATTCTAGTTTTCGAGAACTTTCAGATAACCAGAGCTATTCGGAGGAACTGAGGCCAGTTACAACAAGCGACCCATCAAACTCTGATTCCATTCCGTCAATCTTGGACTTACTGAAACTGAATGCTCCCGAGTGGCCCTATGCAATATTAGGATCGGTGGGTGCAATTATGGCAGGCATGGAAGCTCCTCTCTTTGCCCTTGGTATCACCCATATTTTGACCGCATTTTATTCTCCTCACGGTTCTAAAATCAAGCAAGAGATTGATCGAGTAGCTTTGATATTTGTTGGACTGGCTGTTGTAACTATACCTATTTACCTGTTGCAACATTACTTCTATACATTGATGGGAGAGCGTCTCACTGCCCGTGTGCGCTTATTAATGTTCTCAGCTATGCTTACCAACGAAGTTGCGTGGTTCGATTTGGATGAGAACAACACCGGATCACTAACAGCAAAGCTAGCTGCAGATGCAACATTAGTAAGAAGCGCTCTGGCTGACAGACTCTCAACCATTGTCCAAAATGTAGCTCTCACCGTAACAGCATTTGTTATTGCCTTCACGTTGAGTTGGAAACTAACATCTGTGGTCGTAGCATGCCTTCCTCTCCTTATTGGAGCTTCTATCACAGAGCAACTATTTCTCAAGGGATTTGGAGGAGATTACAGCCTTGCCTACTCCAGAGCAACTTCTGTGGCACGTGAAGCTATTTCCAATATACGTACTGTTGCTGCTTTTGGCGCCGAAGATCGAATCTCATTCCAATTTGCCTCTGAACTGAACAAACCCAACAAGCAAGCACTTTTGCGAGGCCACATATCAGGTTTGGGATATGGTGTCACACAGCTGTTTGCTTTCTGCTCCTATGCGCTTGGCCTTTGGTATGCATCCATCTTAATCAAGCACAAGGAGTCTAATTTTGGAGACATTATGAAGTCCTTTATGGTTTTAATTATCACTGCTCTGGCAATAGCGGAAACACTAGCTCTTACCCCCGACATTGTGAAGGGGTCCCAAGTTCTGGGGTCAGTTTTCGGCGTTCTCCGAAGAAAAACGGCCATCCCTCCCAACGACCCCAACTCCAAGGAGGTAGCTGATGTGAAAGGAGAGATAGAGTTTAAGAACGTGTGTTTCAGGTACCCAATGAGACCCGATATTACCATTTTCAACAACTTAAACCTCAAAGTTTCAGCGGGAAAGAGTCTCGCAGTAGTGGGGCAAAGTGGTTCCGGGAAGAGTAGTGTGATCGCACTGGTAGTGAGATTTTACGACCCAACTTCTGGGATGGTTCTGATCGACGGATGTGACATCAGAAGCCTAAACTTGAAATCCTTAAGGCGGAGAATAGGTTTAGTTCAGCAAGAACCCGCTTTGTTCTCTGGCACCATATATGAAAACGTCAAGTATGGAAATGAGGAAGCATCAGAAATAGAGGTAATGAAGGCAGCAAAAGCAGCAAATGCTCATGAATTCATCTGTAGAATGCCTGAAGGGTATCAGACAGAGGTTGGTGAGAGAGGAGTGCAGTTATCAGGGGGACAGAAACAGAGGGTGGCAATCGCGAGAGCTATACTGAAAGACCCATCCGTTCTTCTATTAGACGAAGCAACAAGCGCGCTGGACACAGTATCAGAGAGGATGGTCCAAGAAGCTCTTGATAAGCTTATGGAAGGGCGAACAACAATTTTGGTGGCTCACAGGTTGTCAACTGTTCGGAATGCAGACAGGATTGCGGTGCTGCAAAATGGGAGGGTGGTTGAAATGGGAAGCCATGACAACCTCATTTCTAAACCCGCAAGCATCTATAAGCAACTGGTAAGTCTACAGCAGGAAAAGCCTGACCATTGA 3891 0.4503 MGPLASGHMIKDGLFELQNRHRVTFPKGSYGAEFLVGLVKLSHLLVSHGFRVVGVHPPFTMEELELTSHSASQQDQPSKATKTETVSFFGLFAAADTIDYVLILFGSVGACLHGAALPVFFVLFGRMIDSLGHLSKHPHKLSSTVSEHALYLVYLGLVVLVSAWIGVAFWMQTGERQTARLRLKYLQSVLKKDINFFDNEARDANILFHISSDAILVQDAIGDKIGHAIRYLSQFIVGFAVGFTSVWQLTLLTLAVVPLIAIAGGAYTITMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEDKAVASYSKSLDIALKLGKKSGFAKGVGVGLTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPSLASIAKGRAAAASIINMIASVSNNCISLDKGTVVPQLAGEIEFCEVCFSYPSRSHTVFEDLTFSVSSGKTVAVVGPSGSGKSTIISMMQRFYDPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATTISGNILLGKEDADMDQIIRAAKAANAHSFIQGLPDGYHTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQQALEKLMSNRTTIIVAHRLSTIRDVDTILVLKNGQVVESGTHLELMSKNGDYVSLVSLQASENSTSSSTISRSGSSKNSSFRELSDNQSYSEELRPVTTSDPSNSDSIPSILDLLKLNAPEWPYAILGSVGAIMAGMEAPLFALGITHILTAFYSPHGSKIKQEIDRVALIFVGLAVVTIPIYLLQHYFYTLMGERLTARVRLLMFSAMLTNEVAWFDLDENNTGSLTAKLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWKLTSVVVACLPLLIGASITEQLFLKGFGGDYSLAYSRATSVAREAISNIRTVAAFGAEDRISFQFASELNKPNKQALLRGHISGLGYGVTQLFAFCSYALGLWYASILIKHKESNFGDIMKSFMVLIITALAIAETLALTPDIVKGSQVLGSVFGVLRRKTAIPPNDPNSKEVADVKGEIEFKNVCFRYPMRPDITIFNNLNLKVSAGKSLAVVGQSGSGKSSVIALVVRFYDPTSGMVLIDGCDIRSLNLKSLRRRIGLVQQEPALFSGTIYENVKYGNEEASEIEVMKAAKAANAHEFICRMPEGYQTEVGERGVQLSGGQKQRVAIARAILKDPSVLLLDEATSALDTVSERMVQEALDKLMEGRTTILVAHRLSTVRNADRIAVLQNGRVVEMGSHDNLISKPASIYKQLVSLQQEKPDH 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2054 1296 ProSitePatterns ABC transporters family signature. 565 579 IPR017871 GO:0005524|GO:0016887
Glsi08g2054 1296 Pfam ABC transporter 1071 1219 IPR003439 GO:0005524
Glsi08g2054 1296 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 104 392 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi08g2054 1296 FunFam ABC transporter B family member 4 1042 1294 - -
Glsi08g2054 1296 Pfam ABC transporter transmembrane region 106 376 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi08g2054 1296 Pfam ABC transporter transmembrane region 731 1003 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi08g2054 1296 Gene3D ABC transporter type 1, transmembrane domain 90 1019 IPR036640 GO:0005524|GO:0016020
Glsi08g2054 1296 Gene3D - 417 664 IPR027417 -
Glsi08g2054 1296 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1052 1288 IPR003439 GO:0005524
Glsi08g2054 1296 FunFam ABC transporter B family member 4 417 670 - -
Glsi08g2054 1296 SUPERFAMILY ABC transporter transmembrane region 92 400 IPR036640 GO:0005524|GO:0016020
Glsi08g2054 1296 ProSitePatterns ABC transporters family signature. 1191 1205 IPR017871 GO:0005524|GO:0016887
Glsi08g2054 1296 CDD ABC_6TM_Pgp_ABCB1_D1_like 103 400 - -
Glsi08g2054 1296 Pfam ABC transporter 445 593 IPR003439 GO:0005524
Glsi08g2054 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 663 IPR027417 -
Glsi08g2054 1296 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 730 1017 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi08g2054 1296 MobiDBLite consensus disorder prediction 669 710 - -
Glsi08g2054 1296 PANTHER ABC TRANSPORTER B FAMILY 68 783 IPR039421 -
Glsi08g2054 1296 Gene3D - 1042 1296 IPR027417 -
Glsi08g2054 1296 CDD ABC_MTABC3_MDL1_MDL2 427 663 - -
Glsi08g2054 1296 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 427 662 IPR003439 GO:0005524
Glsi08g2054 1296 CDD ABC_6TM_Pgp_ABCB1_D2_like 719 1035 - -
Glsi08g2054 1296 SMART AAA_5 453 639 IPR003593 GO:0016887
Glsi08g2054 1296 SMART AAA_5 1079 1265 IPR003593 GO:0016887
Glsi08g2054 1296 SUPERFAMILY ABC transporter transmembrane region 718 1032 IPR036640 GO:0005524|GO:0016020
Glsi08g2054 1296 CDD ABC_MTABC3_MDL1_MDL2 1052 1290 - -
Glsi08g2054 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1042 1290 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2054 Glsi-ChrGlsi08 14402346 14407241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2054 75 1291 Calmodulin-binding Proteins AT2G36910 50.240 0.0 1226