Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2053 ATGACACTCGAAGATTTCTTTACCTTGACTGAGATGAAAGATGGGCTCACAGCCCCCTGTCGAGTGCAGGAGTTGGTCTCTGTAATGCAGAAGGAGAAAGATTTTGTTCCTAAGAATGTTGGTGATGCAACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGATAATAAAGATTGTCTTGACCTTTTCATTCAGTTAGATGGTCTTTGTTTCATTAATAGGTGGTTAAAGGATGCTCAAAATGTTGGTGTTGACACAAATGAAGGCTTCATTGAAGAGTCAATTACTGCACTGTTACGAGCAATTGAAAAGCTGCATCTAGACAGTGAGAAGTCCATGTCATCAGGGATTTGGGTAACTGTAAAAAATCTTCTTGGCCATCATAGCTCTAGGGTTCAGGATGGAGCAAAAGTACTGTTTGAAAGCTGGAAGGTGGGTGGAAACAGTGAAGCGGATCCTCATGATATGGAGTTTGTTAGAGTCAATGGTGGGAGTGACAGGATTGTCAGGGAGGAAGGTCAGCCATCTGCTCTGAATGAAGCTAGCACTGATAATGGTCATATATCAGGACTTGTTGCAGGTGAGAAATCTCCATTGAGAAGCACAGATAGTCTACAACCAGAAAAGGTTGCCAGGGTACAGATACAGAGTTCTAATAATGAGCTTCATTCCCCCATAAGTTTGGATAGTGAAGACATCAAAGAGAGATCAAGAGATCATCTTGCTAATGCTCGAGCCTCTGTTCAAGAAGCTGCTCCCATAAAAGAAGGATTACCTTATTGCTCTGTGGGTGAGACCTTTTCATCTGGGACCTATAGCCTCCCTGTTCCAAAGCAAGGCAGTTTTGAAGGACAATCAGATGTTTTTAAGTTAAATGATGCATCCAAAATGGAGAAGCAGGAGCAAAATGTCAATGGTCCTCCAGAAAAACTAGGAGTACCAGAGATCTCCTTGGTGACTATAAAACCAGAGACTGGATCTGTTTCTATGGGTGCTAGTGAAGCAAAATCACCAGAATTTGTAAAAGAACCTGCTTTACATCATACTGTTGAAAACATTGATGATATAGTCTGTCATAATATTACTGCTTCAGGTAGCGTGAAGACACCTGCGTCTGATAGAAAGAGTGGAGTGGATGATATTAGAGCTATAAATTCTGGTAGTCCACAACTTTTCAAGATAGCAGAAAAGGATGATGGCTGTTATTCTAATGCATTGCAGGATTCATCAGTCAGTGGCTGTAACTTGGGAAAGCCTGAGGTATTTCAGACATCTTTCTCCAGAACAGAATATGGCAGCACATTAAAGGAAGGTAAGGGGCATGTTAGTAATGAAGGCAACGATACCTTGAATGGTTCTGATTCTATTAAACCAGGAAAACATCCCAGAAGCCCTAACATGATTGACAAGAGTTCTGACATTGAACTTGAGTATGGCATTGTTGATGCTTTAGAAGTTGCTCGACAAGTTGCTCAAGAAGTTGAGAGAGAAGTCTGCAGCACTTCTTCTGAGAAAATCTCAGAAGGTGGAACCAGCCAACCGGGCAGCCCAGATTCTATAGGAAAAGAGGATGCACTCACTCGTTTTGCACCCAAGGATGTCTCGTCCCTACAAAGCTACTCTGCTGAGCAATGTCCTGTGGAGGAGGGACGTGCAAGTATTTCAGACAGTGTTGAGGTTGAACCAGAATGCATACCTGATGCGGATTCCACACAGGTGACTGAAGCTGCTCCAGATCCAGGAGGCAATTCAGAGAAAAGTCACTGTGCTTTTGATCTCAATGAAGAATTTGGTTCTGATGATATGGATATTTCTGCAAATGTTATGTCTACGCCAATACCTGTTGTATATGCTTCAAAGCCTGCAGCAACTCCCGGCTTGCCTGTGGCCCCTTTGCAGTTTGAGGGGACACTCGGATGGAAAGGATCTGCTGCAACCAGTGCCTTTCGTCCTGCATCACCTCGCAAAAATTGTAGTAGTGAGAAGAATCTTTCTGTTAGTGGGAATTCCAATATTTCCAAGCAGAGGCTAGATTGCCTTGATATTGATCTGAATGTGGCTGAGGGGGAAGATGGATTGGTAAAACAAAATGCTGAATCATCTGGCCTTCCTTCTGGGCAATCATCAGTAGAACTTAGTCCTAAAAGATCAAGCAGGCTTGAATTGGATTTGAACAGTATTGGTGATGATGGTGATGCCCAACCTTCAGATCAGAGGATGGAGGGACAGCTCTTTTATGGCAGAAATGGCCATTGGAGCCCGTCACCTGCATCATCAACATCATCAATGCAGCCATCTGTTAGAAACATTGATTTGAATGACAGGCCATACCTTCAAACTGATTTGGTGGACCAAGGGCCCTGTAAGTCTTCTCAAATTATCAATGCATATGGGGATTCCAAAGCAGATGCTTCTGTTATCTCTATCTTGGGTACCAAGGTGGAAGTTGGTAGAAGAAGAGAAGTTGTTCCTCAAACTCTATCTTTGCCAAATGGCAAGGCTATGGAGCCTGCAATGGATCTAACAATGTCAAGAGCAGGTGGTGTTTTAGGGATGGGCCCCTCAGTATCTTACAGTCATTCACCTGCTTTTGGGTATAATGGCCTGGCATCAGTGTCCCCTTTGTCTTTTTCGTCAGCAATGTATGGTTCAGGTGGCACAATTCCATACATGGTGGACTCAAGAGGGGCTCCAGTTGTGCCTCAGATGGCGGGATCTTCCTCCACTGTCCTGTCATCTTACTCCCCGCCTCCATTCATCATGAGCATGACCGGTGCACAACTTGGTTTAAATGGAGTTGGGCCTTCACGTCCTAACTTCGATCTAAATTCTGGACTCATGATTGATGGTGGGAATAGAGACGCATTGGCTGCAAGGCAATTTTTCTTTCCTGGTCAGAGCAGGGCTATAGAGGAGCATGTAAGAACCGCTCAACAGTCCTCAAGTTCTGGGCTTGGTGGGAAAAGAAAGGAACCAGAGAGTGGGTGGGAAACCTATCCATTTAACTACAAACCTCTGCAACCTCCATGGAAGTAG 3045 0.4417 MTLEDFFTLTEMKDGLTAPCRVQELVSVMQKEKDFVPKNVGDATRQWAAVASTIAATDNKDCLDLFIQLDGLCFINRWLKDAQNVGVDTNEGFIEESITALLRAIEKLHLDSEKSMSSGIWVTVKNLLGHHSSRVQDGAKVLFESWKVGGNSEADPHDMEFVRVNGGSDRIVREEGQPSALNEASTDNGHISGLVAGEKSPLRSTDSLQPEKVARVQIQSSNNELHSPISLDSEDIKERSRDHLANARASVQEAAPIKEGLPYCSVGETFSSGTYSLPVPKQGSFEGQSDVFKLNDASKMEKQEQNVNGPPEKLGVPEISLVTIKPETGSVSMGASEAKSPEFVKEPALHHTVENIDDIVCHNITASGSVKTPASDRKSGVDDIRAINSGSPQLFKIAEKDDGCYSNALQDSSVSGCNLGKPEVFQTSFSRTEYGSTLKEGKGHVSNEGNDTLNGSDSIKPGKHPRSPNMIDKSSDIELEYGIVDALEVARQVAQEVEREVCSTSSEKISEGGTSQPGSPDSIGKEDALTRFAPKDVSSLQSYSAEQCPVEEGRASISDSVEVEPECIPDADSTQVTEAAPDPGGNSEKSHCAFDLNEEFGSDDMDISANVMSTPIPVVYASKPAATPGLPVAPLQFEGTLGWKGSAATSAFRPASPRKNCSSEKNLSVSGNSNISKQRLDCLDIDLNVAEGEDGLVKQNAESSGLPSGQSSVELSPKRSSRLELDLNSIGDDGDAQPSDQRMEGQLFYGRNGHWSPSPASSTSSMQPSVRNIDLNDRPYLQTDLVDQGPCKSSQIINAYGDSKADASVISILGTKVEVGRRREVVPQTLSLPNGKAMEPAMDLTMSRAGGVLGMGPSVSYSHSPAFGYNGLASVSPLSFSSAMYGSGGTIPYMVDSRGAPVVPQMAGSSSTVLSSYSPPPFIMSMTGAQLGLNGVGPSRPNFDLNSGLMIDGGNRDALAARQFFFPGQSRAIEEHVRTAQQSSSSGLGGKRKEPESGWETYPFNYKPLQPPWK 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2053 1014 Pfam TFIIS helical bundle-like domain 101 147 IPR017923 -
Glsi08g2053 1014 MobiDBLite consensus disorder prediction 506 521 - -
Glsi08g2053 1014 MobiDBLite consensus disorder prediction 437 472 - -
Glsi08g2053 1014 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 21 149 IPR035441 -
Glsi08g2053 1014 MobiDBLite consensus disorder prediction 976 1014 - -
Glsi08g2053 1014 MobiDBLite consensus disorder prediction 976 990 - -
Glsi08g2053 1014 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Glsi08g2053 1014 MobiDBLite consensus disorder prediction 570 591 - -
Glsi08g2053 1014 MobiDBLite consensus disorder prediction 699 720 - -
Glsi08g2053 1014 MobiDBLite consensus disorder prediction 701 718 - -
Glsi08g2053 1014 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 1014 - -
Glsi08g2053 1014 MobiDBLite consensus disorder prediction 650 672 - -
Glsi08g2053 1014 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 148 IPR035441 -
Glsi08g2053 1014 MobiDBLite consensus disorder prediction 502 526 - -
Glsi08g2053 1014 MobiDBLite consensus disorder prediction 653 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2053 Glsi-ChrGlsi08 14393988 14397032 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Glsi08g2053 Med26 7e-05 No_clan