Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2049 ATGGACCAGAAGAATATTGTTAGATTGTTGACAGCAAGTATTGATAGTTTCATTCAAGATCGGTTAATTCACAAAGAAAGAAGGATCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGCTGTGACAAAGACAGGGAAGTTCAGTACTCTGATCAAGCAGTATTAGCAAATCTAGATTGGGGTATTGAAGCCCTTGAAGAAGCAATCAATACCTATAATATGGAAACTAAGATTGCCCGACTAGACTACGCTGAGAAGATGTTGCAAGTGTGCGCCATGTTGAATCCCAAGCAAAAAACTGCTGGAGTACCCAATTTCTACCTCTCAGCTTGGGCGCACCTCAATCTATCCTACCTATCCAAGTTGCGGAACAATATTCAAAATTCTATTTTTCATGCTCTTGAGATGTTCATTGTTGATCCTTTCTTCTCACGAATTGATTTTGCTCCTGAACTTTGGAAAGATCTATTTCTTCCACACATGAGCTCCATTGTAGGGTGGTATTCAGAAGAGAGGCACAGGCTTATGATGGAAGTGATACCTGACTCTTCTGATTTGTCCTTTACAGCTGATTTTGATCAATTCTTCAATGAGTCTCTCATATTTTCTATGAGGCCACATCAATTAGATAAACTGCAAAAGCTCGAGCAGCTTTATGCAGAGTCATTGGATGAAAACACCCGGCTTTATGCAAATTACTATAAGGATTGCATCAACTCTGATTCTACCTCAAGCAAGAAAATGGTTCCAATGTTGCCTATTGCTGAGCCCCCAATGACTCCTTTGCACGAGTTGAGCCGCTCCATTCCTGATTACGTCAAATTTGGTCCTATATTACCCAAGAGTTCTGGGTTTTCTCCAGTTCTGAGATCTAAACATGCTGCAAATCAAACAATCAGAGTGAATGTATCTTCCAGCCATTCACAAAAAGTGGAGAAGTCGTCTATATGGGGTGCCAAGGAGAGTATCGCTGAAGAGTATGAAGATGATTTAGATTATGACCTCAATGATGCATACGTGAATTCAGATAAAAAAACTGTCTCTCCTAGAATGAAGATGACCCAGGATGAAGATATTCAGCCAAAAGTACACCAATCAAACCAGAAGAATCAAATATATTCTCCTACAATCTTCTCTCCCCTGGAATCCCCAAGAAATCCTCCGAACAATTCATCTTCAAATCTTGAAATACACAATAAAAGAGAACCCCAGTCTTTGCGGTTATTTTCTAATCGTTTCACGGACTCTACTATTTCCAACTCTTTACCATTATCTCCGCACATGAACACCGATCACAGCATCAGCTCAGAAGACTCTGATAATGAAATGATGGGCATGGAGAACGGTCAGAGGAAAAACTCTAGCCAAGGAAAAATTATGAACCATGAGAAAGAGAATATCCTGGTATTATATGACAGTTCCCTTAATGAGAGTGACGAGGGACATAGCAGCTGCTATTCGTTGCCCAAATCAGAGAAGCTTACCAATCTATCAAGACCACCCAAAGATTTTGTCTGCCCTATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAGACAGGTCAGACATATGAAAGAAAAGCAATTCAGGAGTGGCTTAAAACAGGAAACACAACATGTCCCATCACACGACAGCCTATATCTGCAAACACATTACCCAAAACAAACTACGTTTTGAAGAGATTGATAACATCGTGGAAAGAAAAGCATCCTGAACTAGCTCAGGAATTCTCAAATTCTGACACATTAAGGGGTTCGTTGAGTTCTCCCTCCATAAAAGACATACCAGCGGTCTCTATTATACACAGAAAAACCGGTTTACCAACTTATAAGAACAAAGATGATTATATTAGCCACAGGAGCAAAAGATTTGTGCAGGTCGCTGTCTCAACATCACCAACAAGCGTAATATCCCAAGCTGCAGTTGAAACAATTATAAATTGTTTAAAACCTTATATTTCAAGTCTCTGTACATCAGAAAACTTGCAAGAATGTGAAGAGGCTGTATTGGCAATAACCAGATTATGGAAGGACTCAAAGACTGATCCTCAGATTCATTCTTATTTATCGGAACCAACTGTCGTAAATGGTTTGATGGAAATACTTTCTGCTTCTCTGAATAGAGAAGTTCTGAGAACATCAATTTATATTCTCTCTGAGCTAATTTTTGCGGACGAAAGTGTTGGAGAAATACTTACCAGTGTAGATTCCGATTTTGATTGCTTGGCTTCTTTGCTTAAGAATGGTTTGGTCGAGGCTGCAGTTCTTATTTACCAACTGAGGCCTGTTTTTGATCAACTTTCAGCTCATGAACTTATACCCTCCCTTGTCCAGCTGATCCCGAACAAAAATGAGGAGCTGGATGAGCTTCGGTTGGTTATGGACCCCAAAGATGCTGCCATAGCCATTCTTGAGCAAATTTTGTTAGGAGGGGGTGAATATAGTAGGTCCCTCAACGCTTTGAGTGTTATTTCAGCAAACGGAATTCCAATCTTGGTGAAGTATTTGGAAAGGATGGAAGGAAGGAGGTCTGTTGTTTCCATACTTCTGTGTTGTATGCAGGCTGAAAAAAGTTGCAGGAGCTTAATAGCCAACAGAATTGAATTATCTCCTGTTCTTGAATTATTTCATGCTGGAAATGACAGTGTCAGAGGTATCTGTGTGGAGTTTCTCTCACAGCTAGTTCAACTGCATCGAAGAACATTCTGCAACCAGATATTACAGATAATCAAGGATGAAGGAGCATTTAGTACCATGCATACGTTTCTAGTATATCTCCAGATGGCTCCTATGGAGCAACAACTTGCTGTTGCTAGTCTATTGCTTCAGCTTGATCTCCTGGTTGGCCTTTTTGACATCAATTCTGTTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGGCACTGATTGAAGCACTTTGGCGAAAGGACTTCTCAAATACTCAAGTGAAGGCTTTAGATGCTTTATTATCTCTTATCGGGCATCTCACTTCCTCAGGAAAGTCATATACTGAAGCCTGGTTGCTCAAGATTGCAGGATTTGATGAACCTTACAATGCTTTAATGAAAGCTGAGCAGTTGGGAAAATATGACAATCATTTGATGGAAACAATGGAGGATGAAGAAAATGCTTTGAGCTCTTGGCAGAAAAGGGTGGCTTTTGTTCTTTGCAACCATGAAAATGGTTCCATATTTAAAGCTTTGGAAGAATGCCTAAGGAGTAATTCCTTAGACACGGCAAAATCATGCCTTGTCCTTGCCACATGGCTCACACACATGCTCTCCAATCTTCCTGATACTGGTGTAAGGGATGTCGCTCGCATATCCTTGCTTGAAGAACTTATAAATGTCCTCCAATCATCCAAGAACCTGGAGGAAATGATCATGGCTACTCTTGCTTTGAAGACTTTCATTAATGATCCAGTTGCACTTGAAGCACTCGGAGTTTATGCCAAAAGCATCTATAGAACCTTGAGAAAGCTGAAGAAATATTCAGTGGTGTCTGCTGATATTATGAAAGCATTACTGAACTTAAAATCTGTTGATGTGACAGCGTTGTGGAGCTGTACTGAAGTTGTTGAGTTAGATTCGAGCGCAAATGGAGGGGTACTTTCTTTGCTTTATGTGAATGGTTGGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCTGGGAAGAGAGTATTAAGATTGATTCAAGAAACTCATGAGCACACAAAAGCTGTAACATGTCTCTATTCTTCAGGTGATAAACTATACAGTGGCTCCTTAGACAAAACCATCCGGGTTTGGACCATCAAACATGATGAGATTCAGTGTACTAAAACTCATGATATCAAAGAGGCTGTGTATGAGTTGATAGCCAATGATAATCTGGCATGCTACGTTTATAATTGGTCGGAGGCTCCGAAGCTTATTAATTTCAACAAATATGTGAAATGCCTTGCAATGGCTGGAAACAAACTATATTGTGGTTGCTCTGGCTACAGTGTTCAGGAAGTTGACTTGTCCAATTATACATCAAACACGTTGTTCTCCGGTACGAGAAAATTGTTGGGAAAACAAACCATACACTCCCTTCAAATTGATGATGGTTTGGTGTTTGCTGGTGGTTCTTCAGTTGATGCAACAGCGGGAAAGATTTTATCGCTGTCCACCAAAGCAGTGGTGGGATCACTCTCAACAGTACTCGACATCCACTGCATAGCCATCAATAGTGACTTCATATTTACGGGCACAAAATGTGGCACCATTGAGGTTTGGCTAAAAGATAAGTTCACCCGGGTTGCTTCCATCAAAATGGCTGGTGCTCACACCAAAATTACGTCCTTAGTATCAGATGCAGATGGTATGATGCTTTTTGTTGCTTCCTCCGACGGCAAGATCCAGGTTTGGGCTTTGGATTAG 4443 0.4074 MDQKNIVRLLTASIDSFIQDRLIHKERRIQHKEQCAERLAAEDGSCDKDREVQYSDQAVLANLDWGIEALEEAINTYNMETKIARLDYAEKMLQVCAMLNPKQKTAGVPNFYLSAWAHLNLSYLSKLRNNIQNSIFHALEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLIFSMRPHQLDKLQKLEQLYAESLDENTRLYANYYKDCINSDSTSSKKMVPMLPIAEPPMTPLHELSRSIPDYVKFGPILPKSSGFSPVLRSKHAANQTIRVNVSSSHSQKVEKSSIWGAKESIAEEYEDDLDYDLNDAYVNSDKKTVSPRMKMTQDEDIQPKVHQSNQKNQIYSPTIFSPLESPRNPPNNSSSNLEIHNKREPQSLRLFSNRFTDSTISNSLPLSPHMNTDHSISSEDSDNEMMGMENGQRKNSSQGKIMNHEKENILVLYDSSLNESDEGHSSCYSLPKSEKLTNLSRPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQPISANTLPKTNYVLKRLITSWKEKHPELAQEFSNSDTLRGSLSSPSIKDIPAVSIIHRKTGLPTYKNKDDYISHRSKRFVQVAVSTSPTSVISQAAVETIINCLKPYISSLCTSENLQECEEAVLAITRLWKDSKTDPQIHSYLSEPTVVNGLMEILSASLNREVLRTSIYILSELIFADESVGEILTSVDSDFDCLASLLKNGLVEAAVLIYQLRPVFDQLSAHELIPSLVQLIPNKNEELDELRLVMDPKDAAIAILEQILLGGGEYSRSLNALSVISANGIPILVKYLERMEGRRSVVSILLCCMQAEKSCRSLIANRIELSPVLELFHAGNDSVRGICVEFLSQLVQLHRRTFCNQILQIIKDEGAFSTMHTFLVYLQMAPMEQQLAVASLLLQLDLLVGLFDINSVEPRKMSIYREEAVEALIEALWRKDFSNTQVKALDALLSLIGHLTSSGKSYTEAWLLKIAGFDEPYNALMKAEQLGKYDNHLMETMEDEENALSSWQKRVAFVLCNHENGSIFKALEECLRSNSLDTAKSCLVLATWLTHMLSNLPDTGVRDVARISLLEELINVLQSSKNLEEMIMATLALKTFINDPVALEALGVYAKSIYRTLRKLKKYSVVSADIMKALLNLKSVDVTALWSCTEVVELDSSANGGVLSLLYVNGWVLSGHSDGTIKVWDAGKRVLRLIQETHEHTKAVTCLYSSGDKLYSGSLDKTIRVWTIKHDEIQCTKTHDIKEAVYELIANDNLACYVYNWSEAPKLINFNKYVKCLAMAGNKLYCGCSGYSVQEVDLSNYTSNTLFSGTRKLLGKQTIHSLQIDDGLVFAGGSSVDATAGKILSLSTKAVVGSLSTVLDIHCIAINSDFIFTGTKCGTIEVWLKDKFTRVASIKMAGAHTKITSLVSDADGMMLFVASSDGKIQVWALD 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2049 1480 SMART WD40_4 1398 1434 IPR001680 GO:0005515
Glsi08g2049 1480 SMART WD40_4 1240 1277 IPR001680 GO:0005515
Glsi08g2049 1480 SMART WD40_4 1197 1235 IPR001680 GO:0005515
Glsi08g2049 1480 SMART WD40_4 1437 1478 IPR001680 GO:0005515
Glsi08g2049 1480 MobiDBLite consensus disorder prediction 444 461 - -
Glsi08g2049 1480 Gene3D - 655 931 IPR011989 -
Glsi08g2049 1480 SUPERFAMILY ARM repeat 631 1150 IPR016024 -
Glsi08g2049 1480 SUPERFAMILY WD40 repeat-like 1219 1479 IPR036322 GO:0005515
Glsi08g2049 1480 Pfam U-box domain 506 576 IPR003613 GO:0004842|GO:0016567
Glsi08g2049 1480 ProSiteProfiles Trp-Asp (WD) repeats profile. 1247 1286 IPR001680 GO:0005515
Glsi08g2049 1480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1446 1480 - -
Glsi08g2049 1480 ProSiteProfiles U-box domain profile. 504 579 IPR003613 GO:0004842|GO:0016567
Glsi08g2049 1480 ProSiteProfiles Trp-Asp (WD) repeats profile. 1222 1235 IPR001680 GO:0005515
Glsi08g2049 1480 Gene3D - 1176 1304 IPR015943 GO:0005515
Glsi08g2049 1480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 587 IPR013083 -
Glsi08g2049 1480 MobiDBLite consensus disorder prediction 350 408 - -
Glsi08g2049 1480 MobiDBLite consensus disorder prediction 369 404 - -
Glsi08g2049 1480 MobiDBLite consensus disorder prediction 422 437 - -
Glsi08g2049 1480 SUPERFAMILY RING/U-box 503 577 - -
Glsi08g2049 1480 CDD RING-Ubox_PUB 506 558 IPR045210 -
Glsi08g2049 1480 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1479 - -
Glsi08g2049 1480 ProSiteProfiles Trp-Asp (WD) repeats profile. 1446 1480 IPR001680 GO:0005515
Glsi08g2049 1480 Pfam WD domain, G-beta repeat 1247 1276 IPR001680 GO:0005515
Glsi08g2049 1480 Pfam WD domain, G-beta repeat 1220 1235 IPR001680 GO:0005515
Glsi08g2049 1480 Gene3D - 1306 1480 IPR015943 GO:0005515
Glsi08g2049 1480 SMART Ubox_2 508 572 IPR003613 GO:0004842|GO:0016567
Glsi08g2049 1480 MobiDBLite consensus disorder prediction 354 368 - -
Glsi08g2049 1480 Coils Coil 217 237 - -
Glsi08g2049 1480 MobiDBLite consensus disorder prediction 422 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2049 Glsi-ChrGlsi08 14365083 14371282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2049 495 900 U-box Gene Family AT1G23030 25.882 2.25e-17 85.9