Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2034 ATGCATTTGAATCAAAAATATGAAATTGATAATTCCAAGTTTCAGACAAGTAATATTGAAGTGGCTCCTAGTCTGAGGAAAATAGTTAATCTTTCCTCACTTCAAAGTGAGCCAGGCATAAGTGGAAAACATCATGGTAAATCAAAAGTTTCAAGAAATGCAAAATCTGGGATTCAAAGATCAAATACTGAGTCTTCTAATTCGATTCCAGTTAACAATTGCCGTTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTCAGTTTAATTCAGGACGCTAAGGATGGTACCCTGGATCTAAATAAAACTGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGATATCACAAATGTTCTTGAAGGAATAGGATTGATAGAAAAAACTTCAAAGAACCATATACGATGGAAGGGATATGATGGGCTGGGGCCAGGCGAGCTGGACGATCAAGTTACTAGACTAAAGGTTGAAGTTGAAAGTCTATATGCAGAGGAATGTCAACTTGATGATTCTATAAGGAAAAAGCAAGAGCTTCTAAGAAGTTTGGAGGAAAAAGAAAATTATCAAAAGTGCCTTTTTTTGACTGAGGAAGATATTCTTAGCCTTCCATGCTTCCAGAATCAAACACTTATTGCGATCAAGGCTCCCCAAGCTAGTTTCATTGAAGTTCCTGATCCTGATGAGGATAATGGTTTCCCGCAAAGGCAGTACAAAATGATTGTTAGAAGCACCACTGGACCAATAGATTTGTACCTCTTGAGCAAACACAATGGCGACTTCGAGGATGTTAGGGTCAAGCAGGCTAAATTAGTAGATTCTTCATGGAATATTGGCCAGTGTGGATTGAAGGGTGCAACATTATGTTTAGAAAGCCAAGATGCTCAGAGAAATCCTTCTCAAAGTTTTAGTTCGCTGGGTTCAGAGGCAGCTGGCATTCAAAGAATTACTCCTACAGATTTTGTTATTGAAGATGATTATTGGTTTCAATCAGATCATGGAGTGACCCTAACAGATTTGTGGGCAAACGAGCAGTTAGTTCAGATAGATGAGCTCCTTCAAGACGATTATTCCAATGGGGTGGCAGCATTCACTGAAACACCGGCATCACTGACAGATTTGGTCGATACGTAA 1137 0.3887 MHLNQKYEIDNSKFQTSNIEVAPSLRKIVNLSSLQSEPGISGKHHGKSKVSRNAKSGIQRSNTESSNSIPVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGYDGLGPGELDDQVTRLKVEVESLYAEECQLDDSIRKKQELLRSLEEKENYQKCLFLTEEDILSLPCFQNQTLIAIKAPQASFIEVPDPDEDNGFPQRQYKMIVRSTTGPIDLYLLSKHNGDFEDVRVKQAKLVDSSWNIGQCGLKGATLCLESQDAQRNPSQSFSSLGSEAAGIQRITPTDFVIEDDYWFQSDHGVTLTDLWANEQLVQIDELLQDDYSNGVAAFTETPASLTDLVDT 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2034 378 MobiDBLite consensus disorder prediction 52 70 - -
Glsi08g2034 378 MobiDBLite consensus disorder prediction 36 70 - -
Glsi08g2034 378 Pfam E2F/DP family winged-helix DNA-binding domain 77 140 IPR003316 GO:0005667|GO:0006355
Glsi08g2034 378 Pfam E2F transcription factor CC-MB domain 156 255 IPR032198 GO:0046983
Glsi08g2034 378 FunFam E2F transcription factor 1 69 142 - -
Glsi08g2034 378 SUPERFAMILY E2F-DP heterodimerization region 151 257 IPR037241 -
Glsi08g2034 378 Gene3D - 69 142 IPR036388 -
Glsi08g2034 378 CDD E2F_DD 151 258 IPR032198 GO:0046983
Glsi08g2034 378 SUPERFAMILY "Winged helix" DNA-binding domain 75 138 IPR036390 -
Glsi08g2034 378 SMART E2F_TDP_2 75 140 IPR003316 GO:0005667|GO:0006355
Glsi08g2034 378 Gene3D - 147 258 - -
Glsi08g2034 378 PANTHER TRANSCRIPTION FACTOR E2F 38 347 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2034 Glsi-ChrGlsi08 14283164 14286259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2034 32 344 E2F-DP Transcription Factor Family AT1G47870 53.292 2.70e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi08g2034 E2F_CC-MB 9e-28 No_clan