Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2021 ATGGCTTCCGTCGAAGAAAATATTAAAAATGGAGGTCAAACTCTTGTTGCGGAGATGAAGCTGCTAAAAGAAATGCAGTACCCCTCTCCCTCTGGCGTCCGAAAGGCTTTAAATTCCGAGTTATGGCATGCTTGCGCGGGCCCGCTTGTATCCTTGCCTCCGCTGGGGAGTCTTGTGTATTACTTCCCTCAGGGACACAGCGAGCAGGTGGCAGCTTCCACCGGAAGGACAGCACACTCGCAGATTCCAAACTATCCGAACCTTCCATCTGAGTTGCCGTGCCAAGTTCAAAGTGTCACACTTCATGCAGACAAAGATACAGACGAAATCTATGCTCGAATGAGTCTCCAACCATTGAATTCTGAGAAAGACGTGGTTCCAATATCTGAGTTTGGGCTAAAGCCCAGTAAACATCCAAGTGAATTTTTCTGCAAAACTTTGACTGCAAGTGACACCAGCACCCATGGTGGCTTTTCGGTACCACGCAGGGCAGCAGAAAAGCTCTTTCCCCAATTGGATTATACAATTCAACCCCCAACTCAAGAACTTGTTGTCCGAGACTTGCACGATAATACCTGGACATTTCGACATGTATATCGCGGTCACCCCAAAAGACACCTTCTCACAACAGGTTGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAAAGCAGGCGATGCTGTTCTTTTCATCAGGGATGAGAAATCGCAATTGCTAGTTGGTGTGAGGCATGCTAACGATCAACACTCAGCATTGCCATCATCAGTGCTTTCTACTGATAGCATGCACATTGGTGTGCTTGCTGCAGCAGCTCATGCTTCTGCTAATCGTAGCCCATTCACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCTTCTGGCTAGATACAGAAAATCTGTATATGGGACCCAGCTCTCAGCTGGTATGAGATTTGGTATGATGTTTGAGACAGAGGAGTCGAGTAAGCGCAGATACATGGGTACAATAGTTGGTATCAGTGACTTGGATCCTTTGAGATGGCCTGGTTCTAAGTGGCGAAATATTCAGGTGGAGTGGGACGAGCCAGGCTTCTGCCATAAGCAGAATAGAGTTAGTTCATGGGAAATTGAGACTGCTGAAAGTCTTTATAATTTTCCTTCTTTGACTTCAAGTCTGAAACGACCATTACAATCTGGAATTTTGGGTGCAGAAAATGAGTGGGGAACTTTGTTAAGGAGACCTTTTATTCAGGTTCCCGAAAATGGGAATGTGGAGCTCTCAAACCCTCTAGCAAATCTCTATCCACAACACCTGCTGAAAATTCTTTCTCAACCTCTACTTAATAGTCCTGGAAACTTTTCATGGGTTACTCAACAAGAATATGCTACTAAGAGAGAATCCTTACAAGAGGTGAAGACTACTTTGGCAAAAGATAACCAAAAGGCCTATTCAGCATGTTCGGAAAGCATACCACTAAAAGATCTACGTCATTCTCAATCTATCCCAGATCAATCTAACGCCTTAAACTTGCATTCGCTGTTGAAAAGTGATCAGCCAGGAAGATTGCATGCTCGGGGCAAAATTGATAATCCTCCATCAGCTGCGACAGTTGCTGATACGTCAAAATCTGTATCTGAGGTTTTAAGTGATTATGACTTCCCTTCCATGGAAGGATGCAACGTGGAAAAAATGGCCGCACCCCCTGTGAACCCTGAAAGCCTTGCTAGCCAGTTAACATTTGTTAATCAAAAGCAGAATCCATTATTCTCCCAATCTACTCCATGGCCCATGCAGCCCCAGTTTGCATCACCCATAGCCCATTCTCAACTGCTTGATGTGCCCCAATCTGATTCTGCTATTCTAAATGGTCTATTTCCTCAGCCATACATTGATGAATGGTCTGTGTATGCTTCTTGCCAACCTTGTGCTGAGCCTGTATCAGCTCCGCCAGAACAGTCTGCGCTTCTCCCTCAAGCCGCTGATACCCCTTTACCTTCAATGAGCCGAGAGATGTGGGATCATTATGTCAAGAATTTGAAGATCTCACCTCAAGCAGACCAGCTAGCGGCCGCGTTTCGGAAAGGGCTATGTAGCCTTAATTGTATATCTGATTCAAACAGTTTGAGAGATCTGTCAGCGGGGGGGAATGTTGATACTAGTAACAGTGTAAGTACTCTAGTTGATCCTTCTATTTCAAGTACCATTTTGGATTTTCAGAATCCATCAGATTGCATGGTGAGCAACTTAAGTTCGAGCCAGGATGTTCAGTCTCAGATAACATCAGCAAGTCTGGGGGAGTCACATGCTCTTTCTCTGCAATACATCCCTGACAACTCAGGTGGCACATCTTTAAGCCATGTTGATTTTGGTGAAAGCAACTTTCTTCGGCATAACTCATGGCAGCAAGTATCCGCACCCATGCGAACCTATACCAAGGTTCAAAAGGCAGGATCTGTAGGAAGATCAATTGACGTAACCACTTTCAAGAACTACGAGGAGTTGATCTCTGCAATTGAATGCATGTTTGGACTTGAGGGTCTGCTGAATGACACTAGAGGTTCAGGATGGAAATTGGTGTATGTAGATTACGAGAATGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTCGTGGGGTGTGTCCGCTGCATCAGAATTTTATCACCTTTAGAAGTTCAGCAGATGAGTGAAGAAGGGATGAAGCTTCTAGACAGTGCTGCTGTGCAAGGTGGGCATTTGTTGTGGGTGAAGTCCTCTATTAACTTGCTTATGAACCAAATGACACATTCATTTGGCAAGTTGAGTGTTAGAGTAGATGTGGACGGATAA 2820 0.4468 MASVEENIKNGGQTLVAEMKLLKEMQYPSPSGVRKALNSELWHACAGPLVSLPPLGSLVYYFPQGHSEQVAASTGRTAHSQIPNYPNLPSELPCQVQSVTLHADKDTDEIYARMSLQPLNSEKDVVPISEFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPQLDYTIQPPTQELVVRDLHDNTWTFRHVYRGHPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGVRHANDQHSALPSSVLSTDSMHIGVLAAAAHASANRSPFTIFYNPRACPSEFVILLARYRKSVYGTQLSAGMRFGMMFETEESSKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGFCHKQNRVSSWEIETAESLYNFPSLTSSLKRPLQSGILGAENEWGTLLRRPFIQVPENGNVELSNPLANLYPQHLLKILSQPLLNSPGNFSWVTQQEYATKRESLQEVKTTLAKDNQKAYSACSESIPLKDLRHSQSIPDQSNALNLHSLLKSDQPGRLHARGKIDNPPSAATVADTSKSVSEVLSDYDFPSMEGCNVEKMAAPPVNPESLASQLTFVNQKQNPLFSQSTPWPMQPQFASPIAHSQLLDVPQSDSAILNGLFPQPYIDEWSVYASCQPCAEPVSAPPEQSALLPQAADTPLPSMSREMWDHYVKNLKISPQADQLAAAFRKGLCSLNCISDSNSLRDLSAGGNVDTSNSVSTLVDPSISSTILDFQNPSDCMVSNLSSSQDVQSQITSASLGESHALSLQYIPDNSGGTSLSHVDFGESNFLRHNSWQQVSAPMRTYTKVQKAGSVGRSIDVTTFKNYEELISAIECMFGLEGLLNDTRGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPLEVQQMSEEGMKLLDSAAVQGGHLLWVKSSINLLMNQMTHSFGKLSVRVDVDG 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2021 939 Gene3D - 307 380 - -
Glsi08g2021 939 Gene3D - 141 244 IPR015300 -
Glsi08g2021 939 ProSiteProfiles PB1 domain profile. 804 888 IPR000270 GO:0005515
Glsi08g2021 939 SUPERFAMILY CAD & PB1 domains 797 883 - -
Glsi08g2021 939 FunFam Auxin response factor 307 379 - -
Glsi08g2021 939 Gene3D - 800 893 - -
Glsi08g2021 939 SUPERFAMILY DNA-binding pseudobarrel domain 133 272 IPR015300 -
Glsi08g2021 939 FunFam Auxin response factor 141 245 - -
Glsi08g2021 939 Pfam B3 DNA binding domain 143 244 IPR003340 GO:0003677
Glsi08g2021 939 SMART B3_2 143 245 IPR003340 GO:0003677
Glsi08g2021 939 CDD B3_DNA 142 242 IPR003340 GO:0003677
Glsi08g2021 939 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 894 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi08g2021 939 ProSiteProfiles B3 DNA-binding domain profile. 143 245 IPR003340 GO:0003677
Glsi08g2021 939 Pfam AUX/IAA family 848 886 IPR033389 -
Glsi08g2021 939 FunFam Auxin response factor 799 893 - -
Glsi08g2021 939 Pfam Auxin response factor 269 352 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2021 Glsi-ChrGlsi08 14217217 14221587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2021 14 905 B3 DNA Binding Superfamily AT1G19850 55.080 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi08g2021 AUX_IAA 6.2e-10 CL0072