Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2010 ATGGATGATGCTGGGCATCGTGAAAATGGAAGGCACAAAGCTGATCAATATAAATCAGCTCAGGGACAGTGGTTGATGCAACATCAGCCATCCATGAAGCAGATTATGTCGATTATGGCAGAAAGAGATGCAGCCATTCAAGAAAGAAATCTGGCTCTTTCTGAGAAAAAGACAGCTCTTGCAGAACGTGACATGGCATGCCTTCAGAGAGATGCTGCAATTGCAGAACGGAATAATGCGATAATGGAACGAGATAATGCAATTGCAACCCTTCAGTATAGAGAAAACTCCTTAACCAATGGTAATATGTCTTCATGTCCTCCAGGATGCCAAATCTCCCGTGGTGTCAAGCACATGCATCATCCTCAGCAACAAGTTCACCATTTACCTCATATGGGTGATGGTTCGTACAGCACACGGGAAATGCATGCTAGTGATGCCCTGCCAGCAGCTCCTGTACCTTCTGAAGCTGGGAAGTCTCGGCGGGCCAAACGACCAAAGGATGGTAAGTCAATATCACCTAATAAGAAGACAACAAAAGTTGCAAGGAAGGTCAAAAGGGAAAGTGAAGACTTGAATAAGATGATGTTTGGCAAGGCACATGAGTGGAAGAGTGGCCAGGAAGTGGTTAATGGAAGTGATGATCTTAACAAGCAGTTAGTGGTGTCAAAGGCTGATTGGAAAGGTCAGGACTTGGGGTTGAACCAAGTTGCATATGATGAGTCAACCATGCCAGCACCAGTATGCTCTTGTACTGGGGTTCTGAGGCAGTGCTACAAATGGGGGAATGGGGGTTGGCAGTCTGCTTGTTGCACCACAACTCTATCAATGTATCCACTTCCAGCAGTGCCCAACAAGAGGCATGCCCGGGTTGGCGGTCGAAAGATGAGTGGAGGTGCTTTCAATAAGCTGCTTAGCCGGCTTGCAGCCGAAGGCCATGATCTGTCAAACCCAGTTGACCTCAAGGACCATTGGGCCAGACATGGTACAAACCGCTATATCACAATCAAGTAG 1014 0.4704 MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMSIMAERDAAIQERNLALSEKKTALAERDMACLQRDAAIAERNNAIMERDNAIATLQYRENSLTNGNMSSCPPGCQISRGVKHMHHPQQQVHHLPHMGDGSYSTREMHASDALPAAPVPSEAGKSRRAKRPKDGKSISPNKKTTKVARKVKRESEDLNKMMFGKAHEWKSGQEVVNGSDDLNKQLVVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGGAFNKLLSRLAAEGHDLSNPVDLKDHWARHGTNRYITIK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2010 337 Coils Coil 65 85 - -
Glsi08g2010 337 MobiDBLite consensus disorder prediction 1 21 - -
Glsi08g2010 337 MobiDBLite consensus disorder prediction 128 185 - -
Glsi08g2010 337 MobiDBLite consensus disorder prediction 1 15 - -
Glsi08g2010 337 SMART GAGA_bind_2 1 337 IPR010409 -
Glsi08g2010 337 MobiDBLite consensus disorder prediction 158 174 - -
Glsi08g2010 337 PANTHER - 1 337 IPR010409 -
Glsi08g2010 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2010 Glsi-ChrGlsi08 14180032 14181173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2010 65 337 BBR or BPC Transcription factor family AT5G42520 64.505 1.05e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Glsi08g2010 GAGA_bind 2e-108 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g2010 08 14180032 14181173 Glsi08g2010 08 14180032 14181173 ECH