Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2005 ATGGCAACAACGGCTATTTTTTTCTCCCTCTTCCTCGCTTTGGCCTCCTTCGCCACCTTCTTTTCATGCGCCCACTCCTTGTCGGAGATCCAAGCCTTACTAGCCTTCAAGCTCCGCCTCCGCGACCCTCTTGGCTCCTTGGACGCATGGGATTCCTCTACGCCATCCGCTCCTTGTGACTGGCGTGGCATTGTCTGTTACAACGGCCGAGTTCGTGAACTTCGGTTGCCTCGTCTTCAACTCGCTGGTCCTCTCTCTGACTCGCTTTCCAACTTGATACAACTCCGCAAGTTAAGCCTCCATTCTAACAACTTCAATGGCTCCATTCCTTCTTCTCTCTCTCAATGTTTGCTTCTGCGTTCCCTTTACCTTCACAATAACTCGCTTTCCGGCAAACTCCCCCCGGCGCTTCTCAACCTTACCAACCTTCAAGTTGTCAACGTCGCTCACAACCTTCTCTCTGGCACAATCCCCGGCGACATATCGACGTCTCTCCGTTTCCTCGATTTCTCGTCTAATGCATTCTCCGGCGACATTCCGGCCAATTTTTCATCAAAATCTCAGCTGCAGCTCATCAACTTGTCCTACAACCGGTTCTCCGGTGGAATACCGGTCACTATTGGAGTTTTGGAACTTCTTGAGTATCTTTGGCTAGATTTCAATCGGTTGTATGGGACTCTGCCTTCGGCTCTAGCCAACTGCTCTACTCTTGTGCATCTAAGCGCTGAAAACAATGCGCTTAGTGGCTTGATTCCGGCGACCATCGGGATGGTGCCGAAGCTTGAAGTGCTGTCATTGTCCCTGAATCAACTCTCGGGATCGGTCCCCACTTCCCTGTTTTGCAATGTCCACTTGGTTAATTCTTCTCTGAGAATTGTTCAATTAGGCTTTAATGCGCTCACGGGCATTTCCGAGCCGCCAAAAGCAAGGTGTGTCAACGTTTTAGAGACTCTGGAGCTTAAGGGAAATCATATTCGTAGTGCATTTCCCTCGTGGTTGACTAGTGCGACGTCATTAAGGGCTGTAGATCTTTCAGGGAACCACTTTTCTGGTATTTTGCCGGCGGATATCGGGAATTTATTGAGGTTAGAGGAGCTAAGTGTGGCAAATAATTCATTATCTGGTGGAGTCCCCCGTGAAATTGCGAAATGTATTTTGTTACAGGTTCTTGATCTTCAAGGGAACCAATTCTCCGGTCTGATTCCTTCATTTCTTGGCCAACTGAGGAACCTCAAGATTCTATCTCTCGGCGATAACATGTTTACTGGTTCCATACCCACGAATTTTGGAACACTTTCTGAGCTCGAGTCCTTGAATTTAAGCAATAATAAACTAACAGGGGCTATACCCCAGGAGTTAATGCGATTGGGAAACATGAGTGCCTTGAATCTCAGTAATAACCGATTTTCAGGCCAAGTTTCGTCTGATATCGGGGACTTAACAGCTTTGCAGGTTCTTAATTTGAGTCGTTGTGGGTTTTCTGGACGGCTCCCTGATAGTGTTGGCAGTTTAATGGAACTAAAGGTGCTTGATTTAAGTAGGCAAAACCTTTCAGGTGACTTGCCAATTGAGCTTTTTGGATTACCAAACCTGCAAGTTGTTGCTCTTCAAGAGAACCACTTTTCTGGAGCTGTTCCCGAGGGTTTCAGCAGTTTAGTTAGTCTACAGTATCTTAATCTCACCTCCAATGTCTTTGTTGGTGACATTCCGGCAACTTATGGATTTCTTCGGTCGTTAATTGTTCTCTCTGTATCTCACAATCGTATTTCTGGTAGGGTACCGTCAGAGATTGGTAACTGTTCTCAACTTGAAGTGCTCGACCTTCGTTCAAATCGTTTGCATGCTAACATTCCAGGTGATATCTGCCGCCTTTCTCGTTTGAAGGTCCTTAATTTGGGAGATAACAGGTTAACGGGTGATATCCCAGATAATATATCAGAATGTTCTGCTTTGGCTTCACTCTTCCTGGATGCTAATCACTTATTGGGTCATATACCAGAATCCTTGTCAAAATTATCAAACCTGTTTGCGTTGAATCTCTCTTCAAATCAATTGAGCGGAGAAATTCCGGCCAACCTCTCACGCATTTCCGGTTTGAAGTATCTAAATCTATCCAAGAATAATCTTGAGGGTGAGATCCCAAAAATGCTGGGTTCCCGATTCAATGATCCTTCTGTATTTGCAATGAATCAGGAGTTATGCGGAAAACCACTACGTAGAGAATGTGCAAACGCAAGAAGGCGAGGGAGGAAGAGGCTAATATTATTTATAGGCGTGGCTCTAGCTGGACTATGCCTTTTGGCACTATGTTGTTGTGGTTATATATACAGCCTCCTACGGTGGCGCAAGAAGCTCAGAGACGGGGTAACGGGAGAGAAGAAGCGGAGCCCTGCTAGTGCAAGCTCAGGAGCAGACAGAGGTCGAGGAAGTGGGGAAAATGGGGGTCCAAAACTAGTAATGTTCAATAACAAGATTACTTATGCTGAGACATTGGAGGCAACAAGACAATTTGACGAGGAAAATGTATTGAGCAGGGGAAGATATGGTCTTGTATTCAAAGCCTCCTACCAAGATGGGATGGTGCTCTCAATCCGTCGTCTGCCTGATGGGTTCATCGAGGAGGGAACCTTCCGTAAAGAAGCAGAATCATTAGGAAAAGTAAAGCATCGGAATCTAACTGTCCTTCGGGGCTATTATGCAGGACCACCTGATGTAAGGCTCCTTGTTTATGACTACATGCCCAATGGAAACCTGGGGACTCTGCTTCAAGAGGCATCTCAGCAAGATGGCCATGTACTAAATTGGCCAATGCGTCATCTCATCGCACTAGGCATTGCTCGCGGGATAGCTTTCTTGCATTCAGTCTCAATAGTTCATGGGGATGTGAAGCCTCAAAATGTTCTTTTTGATGCTGATTTTGAAGCCCATTTGTCAGAATTTGGGTTAGACCGGATAACAATGGCAACCCCTGCAGAAGCATCGTCATCGTCGACTCCCATAGGATCCTTGGGTTATGTATCACCAGAAGCAGCATTAACTGGGCGAGCGACGAAGGAAGCTGATGTGTACAGTTTTGGGATTGTATTGTTGGAGATACTAACAGGGAGGAAACCAGTGATGTTCACGCAAGACGAAGACATAGTGAAATGGGTGAAAAGACAATTGCAAAGAGGCCAAATTGCGGAATTGCTGGAGCCTGGTTTGCTTGAACTAGACCCCGAGTCCTCAGAATGGGAAGAGTTTCTGCTGGGGATCAAAGTAGCTCTCCTTTGCACGGCACCGGATCCTCTTGATCGACCATCCATGACTGACATTGTTTTCATGCTCGAAGGTTGCCGGGTCGGACCCGAGATTCCATCTTCAGCCGATCCCACAAGGCTACCTTCCCCTGCTTGA 3396 0.4658 MATTAIFFSLFLALASFATFFSCAHSLSEIQALLAFKLRLRDPLGSLDAWDSSTPSAPCDWRGIVCYNGRVRELRLPRLQLAGPLSDSLSNLIQLRKLSLHSNNFNGSIPSSLSQCLLLRSLYLHNNSLSGKLPPALLNLTNLQVVNVAHNLLSGTIPGDISTSLRFLDFSSNAFSGDIPANFSSKSQLQLINLSYNRFSGGIPVTIGVLELLEYLWLDFNRLYGTLPSALANCSTLVHLSAENNALSGLIPATIGMVPKLEVLSLSLNQLSGSVPTSLFCNVHLVNSSLRIVQLGFNALTGISEPPKARCVNVLETLELKGNHIRSAFPSWLTSATSLRAVDLSGNHFSGILPADIGNLLRLEELSVANNSLSGGVPREIAKCILLQVLDLQGNQFSGLIPSFLGQLRNLKILSLGDNMFTGSIPTNFGTLSELESLNLSNNKLTGAIPQELMRLGNMSALNLSNNRFSGQVSSDIGDLTALQVLNLSRCGFSGRLPDSVGSLMELKVLDLSRQNLSGDLPIELFGLPNLQVVALQENHFSGAVPEGFSSLVSLQYLNLTSNVFVGDIPATYGFLRSLIVLSVSHNRISGRVPSEIGNCSQLEVLDLRSNRLHANIPGDICRLSRLKVLNLGDNRLTGDIPDNISECSALASLFLDANHLLGHIPESLSKLSNLFALNLSSNQLSGEIPANLSRISGLKYLNLSKNNLEGEIPKMLGSRFNDPSVFAMNQELCGKPLRRECANARRRGRKRLILFIGVALAGLCLLALCCCGYIYSLLRWRKKLRDGVTGEKKRSPASASSGADRGRGSGENGGPKLVMFNNKITYAETLEATRQFDEENVLSRGRYGLVFKASYQDGMVLSIRRLPDGFIEEGTFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGIAFLHSVSIVHGDVKPQNVLFDADFEAHLSEFGLDRITMATPAEASSSSTPIGSLGYVSPEAALTGRATKEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKRQLQRGQIAELLEPGLLELDPESSEWEEFLLGIKVALLCTAPDPLDRPSMTDIVFMLEGCRVGPEIPSSADPTRLPSPA 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2005 1131 ProSiteProfiles Protein kinase domain profile. 837 1118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2005 1131 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 289 1109 - -
Glsi08g2005 1131 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 26 185 - -
Glsi08g2005 1131 Gene3D Ribonuclease Inhibitor 306 465 IPR032675 -
Glsi08g2005 1131 Gene3D Transferase(Phosphotransferase) domain 1 913 1117 - -
Glsi08g2005 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 957 969 IPR008271 GO:0004672|GO:0006468
Glsi08g2005 1131 Gene3D Ribonuclease Inhibitor 28 181 IPR032675 -
Glsi08g2005 1131 Gene3D Ribonuclease Inhibitor 182 305 IPR032675 -
Glsi08g2005 1131 SUPERFAMILY L domain-like 507 719 - -
Glsi08g2005 1131 Pfam Leucine Rich Repeat 119 140 IPR001611 GO:0005515
Glsi08g2005 1131 SUPERFAMILY L domain-like 23 351 - -
Glsi08g2005 1131 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 204 303 - -
Glsi08g2005 1131 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Glsi08g2005 1131 Pfam Protein tyrosine and serine/threonine kinase 840 1056 IPR001245 GO:0004672|GO:0006468
Glsi08g2005 1131 SUPERFAMILY Protein kinase-like (PK-like) 816 1120 IPR011009 -
Glsi08g2005 1131 FunFam Putative LRR receptor-like serine/threonine-protein kinase 800 912 - -
Glsi08g2005 1131 SMART LRR_typ_2 672 696 IPR003591 -
Glsi08g2005 1131 SMART LRR_typ_2 576 600 IPR003591 -
Glsi08g2005 1131 SMART LRR_typ_2 360 388 IPR003591 -
Glsi08g2005 1131 SMART LRR_typ_2 210 234 IPR003591 -
Glsi08g2005 1131 SMART LRR_typ_2 480 504 IPR003591 -
Glsi08g2005 1131 SMART LRR_typ_2 140 164 IPR003591 -
Glsi08g2005 1131 SMART LRR_typ_2 92 116 IPR003591 -
Glsi08g2005 1131 SMART LRR_typ_2 432 456 IPR003591 -
Glsi08g2005 1131 SMART LRR_typ_2 258 282 IPR003591 -
Glsi08g2005 1131 SMART LRR_typ_2 408 431 IPR003591 -
Glsi08g2005 1131 SMART LRR_typ_2 624 648 IPR003591 -
Glsi08g2005 1131 SMART LRR_typ_2 528 551 IPR003591 -
Glsi08g2005 1131 MobiDBLite consensus disorder prediction 790 817 - -
Glsi08g2005 1131 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 913 1117 - -
Glsi08g2005 1131 Gene3D Ribonuclease Inhibitor 466 750 IPR032675 -
Glsi08g2005 1131 Pfam Leucine rich repeat 506 563 IPR001611 GO:0005515
Glsi08g2005 1131 Pfam Leucine rich repeat 409 469 IPR001611 GO:0005515
Glsi08g2005 1131 Pfam Leucine rich repeat 602 661 IPR001611 GO:0005515
Glsi08g2005 1131 SMART serkin_6 837 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2005 1131 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 471 746 - -
Glsi08g2005 1131 SUPERFAMILY L domain-like 286 570 - -
Glsi08g2005 1131 Gene3D Phosphorylase Kinase; domain 1 813 912 - -
Glsi08g2005 1131 PRINTS Leucine-rich repeat signature 435 448 - -
Glsi08g2005 1131 PRINTS Leucine-rich repeat signature 672 685 - -
Glsi08g2005 1131 FunFam Piriformospora indica-insensitive protein 2 377 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2005 Glsi-ChrGlsi08 14121905 14125300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2005 1 1131 Receptor kinase-like Gene Family AT1G75640 64.877 0.0 1384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Glsi08g2005 PK_Tyr_Ser-Thr 1.5e-31 CL0016