Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2003 ATGGCTTTACAGAATATTGGTGCTTCAAATCGTGATGATGCCTTCTATAGGTATAAGATGCCAAAGATGATAACCAAGATTGAAGGTAGAGGAAATGGCATCAGGACTAATGTGGTTAACATGGTTGAGATTGCAAAGGCCTTGGCTAGACCAGCATCTTACACTATAAAGTATTTTGGTTGTGAGCTCGGAGCCCAGTCAAAATTTGATGAGAAAACTGGAACTTCGCTTGTGAATGGGGCCCACGACACCGCAAAGCTTGCAGGTCTCCTTGAAATTTTCATCAAGAAATACGTTCAATGCTATGGTTGTGGGAACCCCGAAACTGAGATAGTTATTACCAAGTCGCAGATGATCACCCTAAAATGTGCTGCCTGTGGGTTTGTCTCAGATGTTGATATGCGGGACAAGCTTACAACATTTATACTAAAGAATCCGCCTGAGCAGAAAAAGGGACCAAAGGACAAGAAGGCCATGAGGCGGGCTGAAAAAGAGCGGCTTAAAGAGGGTGAGGCTGCTGACGAAGAACTAAGGAAGGTTAAAAAGGTAGGGAAAAAGAAAGGCTCTTCAGATGTGTCTAAGGTATCGTCAAAGAAGAAAAATGCGGGTTCTGATGAGGACCACTCCCCTGCTCGCAGTCATGCTGATGAAAATGATCAAGCTGACGGTGATGATGACGATGATGTACAATGGCTGACAGACACTTCATTAGAGGCAGCCCGACAGCGTATCCAGGAGCAGTTAAATGCTGTTACTGCTGATATGGTCATGCTCTCCACTGGCAGTGAAGAGAAGTCACCTAAGAATTCTCCAGAGCATGAAGTGAAATCTCAGGTTAAAGAGAATGGCAATGGTGCTGTTGTTAGTGCCCATGGGAGGCTTGTTGAGGAAATAAGGGATTATTTGAAGAAGGGTTCTTCTGCTAGTCAGCTTAAATCTTTTCTCGGTTCTCTCTCTGGCAGTTTCCAAGAGATTGTTAATGCTTTACTTGAAGCTCTCTTTGACGATGTTGCCAAAGGATTTGCCAAAGTAGCATCTAAAAAGAAGAACTACCTTGTAGTAGCTGCTCAATTTGGAGGATCTCAAATGGTTTTGTTGCTTGCCATAGAGTCTTTTTGTGGGAAAGCAACCACGGAGGCAGTAAAGGAGGTTGCGCTGGTCTTGAAGGAGCTATATGACTGCGATGTGTTGGAAGAGGAGTTTGTACTTCAATGGTACCAGCGGGGCTTGGTTGGAAGCAATAAGAGCTCGCAAATTTGGAAGAGTGTCAAGCCCTTCATTGAATGGCTCCAGAATGCCGAGTCTGAATCTGAGGACGAATGA 1323 0.4452 MALQNIGASNRDDAFYRYKMPKMITKIEGRGNGIRTNVVNMVEIAKALARPASYTIKYFGCELGAQSKFDEKTGTSLVNGAHDTAKLAGLLEIFIKKYVQCYGCGNPETEIVITKSQMITLKCAACGFVSDVDMRDKLTTFILKNPPEQKKGPKDKKAMRRAEKERLKEGEAADEELRKVKKVGKKKGSSDVSKVSSKKKNAGSDEDHSPARSHADENDQADGDDDDDVQWLTDTSLEAARQRIQEQLNAVTADMVMLSTGSEEKSPKNSPEHEVKSQVKENGNGAVVSAHGRLVEEIRDYLKKGSSASQLKSFLGSLSGSFQEIVNALLEALFDDVAKGFAKVASKKKNYLVVAAQFGGSQMVLLLAIESFCGKATTEAVKEVALVLKELYDCDVLEEEFVLQWYQRGLVGSNKSSQIWKSVKPFIEWLQNAESESEDE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2003 440 Gene3D - 291 440 - -
Glsi08g2003 440 MobiDBLite consensus disorder prediction 143 229 - -
Glsi08g2003 440 SUPERFAMILY ARM repeat 290 434 IPR016024 -
Glsi08g2003 440 MobiDBLite consensus disorder prediction 260 283 - -
Glsi08g2003 440 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 439 IPR045196 GO:0003743|GO:0006413
Glsi08g2003 440 ProSiteProfiles W2 domain profile. 281 440 IPR003307 GO:0005515
Glsi08g2003 440 Gene3D - 105 145 - -
Glsi08g2003 440 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Glsi08g2003 440 Gene3D - 2 104 - -
Glsi08g2003 440 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Glsi08g2003 440 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Glsi08g2003 440 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Glsi08g2003 440 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Glsi08g2003 440 Pfam eIF4-gamma/eIF5/eIF2-epsilon 362 440 IPR003307 GO:0005515
Glsi08g2003 440 SMART 542_3 349 436 IPR003307 GO:0005515
Glsi08g2003 440 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Glsi08g2003 440 CDD W2_eIF5 289 438 - -
Glsi08g2003 440 MobiDBLite consensus disorder prediction 148 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2003 Glsi-ChrGlsi08 14106638 14107960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2003 1 433 Eukaryotic Initiation Factors Gene Family AT1G36730 65.991 0.0 541