Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1999 ATGGCTGAGTTCTTCTCTCTAGTTGAAAAGGAAGGCCCACAAGAAAAAGGAGATAACAGCAATAGCCTATTCTTGTTCAGGAACGAGGAGATCTACAACAAGGGATTCGAAATATGGACAGAGTCTTGTCACCCACACCAACACTTGAAGGACTACTCCTCTCTTGGGGTGGGTCCTAGTCGCAGAAACTACTCCAACCACGACATCCCTGATGAGTCTACAGGATTTGGATTCACGGTAATGAGGTCTGGAAGTCTAGGAAGCGGCATCAACTGTCAGGACTGTGGGAACCAAGCTAAGAAAGACTGTGCACATCTTAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTGAAGAGCACTTGGGTTCCAGCATCCAGACGCCGCGAACGACAGCAACTCCAACAGTTTCGGGGAGATCACTCAAAACGGCACAGAGAACGCCAAGGTGCCGCCTCTCTTGCCTGCCCTCCATTACCACTCCCCTCCACAGGGTTGGAACTGGCACAATTACCAGCTGAAGTCAACTCTCCAGCTGTGTTTCAGTGTGTGAGAGTTAACGCAATGGACAGTCCGGATGAGCAATACGCGTATCAAACCGCTGTCAACATCGGAGGGCACGTTTTCAAGGGAATTCTCTATGATCAAGGCCCTGAAGGCCCTTCTAATGCAGGGGGTGAGAGCTCCTCCGCTGGACGTGAAGCTCAACAAATTAATTTCATAACCGCCGCAACCACCACCACAACCAGAGGCAACGCGTTTGATCCTTCACTCTACCCGGTTCCACTGAATACTTTCCCGGCTGGTACGCAATTCTTCCCACCCCAGAGATCCTAA 852 0.5094 MAEFFSLVEKEGPQEKGDNSNSLFLFRNEEIYNKGFEIWTESCHPHQHLKDYSSLGVGPSRRNYSNHDIPDESTGFGFTVMRSGSLGSGINCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPASRRRERQQLQQFRGDHSKRHRERQGAASLACPPLPLPSTGLELAQLPAEVNSPAVFQCVRVNAMDSPDEQYAYQTAVNIGGHVFKGILYDQGPEGPSNAGGESSSAGREAQQINFITAATTTTTRGNAFDPSLYPVPLNTFPAGTQFFPPQRS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1999 283 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 256 IPR007818 GO:0003700|GO:0006355
Glsi08g1999 283 MobiDBLite consensus disorder prediction 139 161 - -
Glsi08g1999 283 MobiDBLite consensus disorder prediction 139 155 - -
Glsi08g1999 283 NCBIfam LRP1 C-terminal domain 176 223 IPR006511 -
Glsi08g1999 283 Pfam Domain of unknown function (DUF702) 89 224 - -
Glsi08g1999 283 NCBIfam putative zinc finger domain, LRP1 type 91 133 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1999 Glsi-ChrGlsi08 14077603 14078814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1999 18 283 C2H2 Transcription Factor Family AT1G75520 44.817 1.38e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Glsi08g1999 DUF702 4.9e-56 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0168 10 1244805 1246178 Glsi08g1999 08 14077603 14078814 CCT
Glsi08g1999 08 14077603 14078814 Glsi08g1999 08 14077603 14078814 ECH