Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1996 ATGGAGGATGGTCCACCATCATTTGGAAAAGCGAAACTAGGAATGTATTCCACTGAGGTACTGAAGACCATGTTATCTCGTTATGTTGCGGGGCTACCTGGGCAATGGCCAACAAGGCATGCAGGACCACTGTTAAATACCAGGATCAAAACCCATGAGAGTGACGAAGTCTCCAATTGCCCATTCCTCTTTAAAAGTGTCTCTGGTGGTGGAAGGGTCCCAGCTCCCCAGCTGGGTGGTATTGGAATCTTGGAGGAGGGAAAAAAAAATCTCAAGATTCCCAGTTGGTCACTATCTGCATATCCGGCCGAAGCTCAGTGTGCACTGTCAAACATCCACTTGTTGCTATATCCCATTCTCCCTCACATATCTTTGACTTGTGCTCCTCCAATGGCTCCTCAGTCACTATTGGCTCTCTTCCTCTTCTCCTTCTTATCCGCAGCGGTAGCAACTGCCGATGGCCACGACGACCTTCTAATCCAGCAAGTCGTGCCGGACGTTGACGATCACTTGCTTAACGCCGAGCTCCATTTCTCCACCTTCAAGGCCGAATTCGGCAAGACCTACGCTTCAAGAGAGGAGCACGACTATCGCTTCGGTGTCTTCAAGGCTAACTTGCGCCGGGCTAAGTTGCACCAGAAGCTGGATCCCTCCGCCGTCCACGGCGTCACCAAATTCTCCGATCTTACTCCTTCGGAATTTCGCCGGCAGTTCCTCGGCCTAAAGCCTCTTCGTCTTCCCGCCGATGCTAACAAGGCTCCGATCCTCCCTACTAGCGATCTTCCTACAGAGTTCGATTGGCGTGATCATGGAGCCGTCACTTCCGTCAAGGACCAGGGGGCATGTGGATCATGCTGGTCGTTTAGCACCACAGGAGCGTTGGAAGGAGCTCATTTTCTAACGACTGGCAAGCTAGTGAGCCTTAGTGAGCAACAGCTTGTGGATTGCGACCATGAGTGTGATCCAGAAGAATATGGAGCATGTGACTCTGGCTGTAACGGTGGGTTGATGACCTCCGCATTCGAATACACACTCAAGGCCGGGGGACTAGAGCGAGAAGAGGACTATCCTTACACCGGAAAAGATCGTGGTCCCTGCAAATTTGACAAAAGCAAAATTGTGGCTTCCGTAGCTAATTTCAGTGTGGTTTCCATCGACGAAGATCAAATTGCAGCAAATCTGGTGAAGAATGGCCCTCTTGCAGTTGGTATCAACGCAGTTTTTATGCAGACATACATAGGTGGCGTCTCATGCCCATATATATGTGGGAAGCATTTGGATCATGGGGTTCTTCTGGTGGGCTATGGCTCTGCTGCGTATGCTCCCATTCGGTTCAAGGAAAAACCTTACTGGATCATAAAGAATTCGTGGGGAGAGAAATGGGGAGAGAATGGATATTACAAGATCTGCAGAGGCCATAACGTGTGTGGGGTGGATTCCATGGTCTCAAGCGTAGCTGCAATGCATACTTCGAGCCAGTAA 1482 0.5027 MEDGPPSFGKAKLGMYSTEVLKTMLSRYVAGLPGQWPTRHAGPLLNTRIKTHESDEVSNCPFLFKSVSGGGRVPAPQLGGIGILEEGKKNLKIPSWSLSAYPAEAQCALSNIHLLLYPILPHISLTCAPPMAPQSLLALFLFSFLSAAVATADGHDDLLIQQVVPDVDDHLLNAELHFSTFKAEFGKTYASREEHDYRFGVFKANLRRAKLHQKLDPSAVHGVTKFSDLTPSEFRRQFLGLKPLRLPADANKAPILPTSDLPTEFDWRDHGAVTSVKDQGACGSCWSFSTTGALEGAHFLTTGKLVSLSEQQLVDCDHECDPEEYGACDSGCNGGLMTSAFEYTLKAGGLEREEDYPYTGKDRGPCKFDKSKIVASVANFSVVSIDEDQIAANLVKNGPLAVGINAVFMQTYIGGVSCPYICGKHLDHGVLLVGYGSAAYAPIRFKEKPYWIIKNSWGEKWGENGYYKICRGHNVCGVDSMVSSVAAMHTSSQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1996 493 SMART pept_c1 261 486 IPR000668 GO:0006508|GO:0008234
Glsi08g1996 493 Gene3D Cysteine proteinases 153 486 - -
Glsi08g1996 493 FunFam Cysteine protease RD19A 158 486 - -
Glsi08g1996 493 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 279 290 IPR000169 -
Glsi08g1996 493 SMART Inhibitor_I29_2 178 234 IPR013201 -
Glsi08g1996 493 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 426 436 IPR025660 -
Glsi08g1996 493 Pfam Papain family cysteine protease 261 484 IPR000668 GO:0006508|GO:0008234
Glsi08g1996 493 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 450 469 IPR025661 -
Glsi08g1996 493 CDD Peptidase_C1A 262 485 IPR039417 -
Glsi08g1996 493 Pfam Cathepsin propeptide inhibitor domain (I29) 178 234 IPR013201 -
Glsi08g1996 493 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 174 479 IPR013128 GO:0008234
Glsi08g1996 493 PRINTS Papain cysteine protease (C1) family signature 428 438 IPR000668 GO:0006508|GO:0008234
Glsi08g1996 493 PRINTS Papain cysteine protease (C1) family signature 279 294 IPR000668 GO:0006508|GO:0008234
Glsi08g1996 493 PRINTS Papain cysteine protease (C1) family signature 450 456 IPR000668 GO:0006508|GO:0008234
Glsi08g1996 493 SUPERFAMILY Cysteine proteinases 175 485 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1996 Glsi-ChrGlsi08 14050023 14064721 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0171 10 1270231 1272089 Glsi08g1996 08 14050023 14064721 CCT
Glsi08g1996 08 14050023 14064721 Glsi08g1996 08 14050023 14064721 ECH