LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g1993	ATGTTAAAATCAGGGACGGGAAATGAGGAGAGAAAGCAGGTGAAGAGGCCAGCACAGGCCAGCTCCAGAAAAGGGTGTATGAGAGGAAAAGGAGGCCCTGAAAATGCTAGTTGCACCTACAAAGGTGTACGACAGAGAACTTGGGGAAAATGGGTTGCTGAAATTCGCGAACCCAATCGCGGAGCTCGCCTCTGGCTTGGGACATTTGAGACGTCCCGTGAAGCTGCCTTGGCTTATGATGCTGCTGCGCGTAAGCTTTATGGGTCGGAAGCGAAACTCAATCTGCCAGAGCTCTCCGTGAATTCTCAATGTGCACCCTCTTGTGGTATCCCCCAACAGCCTCAGATTCAGCAGAACCCAGGTATTTCCACATCTTGCTTCAATTCCCCTCCAATGGTGTCCATGGCTGTTCAGCAGGTTGGACCAATATACAGCAGTGACTGTATCATGTCTGTGCCCTTTGAGACCAACACTGAGGCAGTGGAAAGCTACGGGAAACCCATGGAGAAGGAGGACGAGTTTAGTCCGTTTTGGGAGTCAGTGAACGAGTTTGATGAATCCATCTGGGCAGAAGCTGCTATGTCTCTAAATTTTCCTATAATGCCAGATGTTGGGATTTACACAACTGGGAACATGCCAGATGTGGGTGCCTGGGACACTCTGCACACTCCATGGTGCGTGTAA	684	0.5029	MLKSGTGNEERKQVKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSREAALAYDAAARKLYGSEAKLNLPELSVNSQCAPSCGIPQQPQIQQNPGISTSCFNSPPMVSMAVQQVGPIYSSDCIMSVPFETNTEAVESYGKPMEKEDEFSPFWESVNEFDESIWAEAAMSLNFPIMPDVGIYTTGNMPDVGAWDTLHTPWCV	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g1993	227	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Glsi08g1993	227	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Glsi08g1993	227	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Glsi08g1993	227	SUPERFAMILY	DNA-binding domain	39	96	IPR016177	GO:0003677
	Glsi08g1993	227	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Glsi08g1993	227	MobiDBLite	consensus disorder prediction	1	33	-	-
	Glsi08g1993	227	MobiDBLite	consensus disorder prediction	1	17	-	-
	Glsi08g1993	227	Gene3D	AP2/ERF domain	39	97	IPR036955	GO:0003700\|GO:0006355
	Glsi08g1993	227	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Glsi08g1993	227	FunFam	Ethylene-responsive transcription factor 2	38	97	-	-
	Glsi08g1993	227	CDD	AP2	38	98	IPR001471	GO:0003700\|GO:0006355
	Glsi08g1993	227	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	12	170	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g1993	Glsi-ChrGlsi08	14037548	14038231	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g1993	15	224	AP2-EREBP Transcription Factor Family	AT1G75490	48.402	2.06e-53	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi08g1993		AP2	6.1e-15	CL0081