Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1990 ATGGAAACCAGCTCAGTTTCCAAGCTACTGATATTTTTCTTCGCGGTCTTGTTCGTGGGTTCTGAGCTGATCCACTGCACTGTCACCTACGATAGAAAGGCCATTGTCATCAATGGCCAAAGGAGAATCCTCATCTCCGGTTCCATTCACTATCCCAGAAGCACCCCCGAAATGTGGGAAGATCTTATTCGGAAGGCCAAAGATGGAGGCCTTGATGTCATAGACACTTATGTTTTCTGGAACGTCCATGAACCCTCTCCTGGCAATTACAATTTTGAAGGGAGGTACGATCTGGTACGGTTCATTAAGACAGTGCAGAAAGTGGGGCTTTATGTTCATCTTCGCATTGGCCCTTATGTATGCGCCGAGTGGAACTTCGGAGGATTTCCTATTTGGTTGAAGTATGTTCCTGGAATCAGCTTCAGAACAGATAATGGGCCTTTCAAGGCGGCAATGCGAGGGTTCACCCAGAAGATTGTCCACATGATGAAGAATGAAAAGCTATTTCAATCTCAGGGTGGTCCAATCATTCTTTCTCAGATTGAGAACGAGTACGGAGCAGAGAGCAGGGCACTGGGAGCTGCTGGTCATGCATACACGAACTGGGCTGCAAATATGGCAGTTGGATTGGGTACAGGAGTCCCCTGGGTGATGTGCAAGGAAGATGACGCCCCAGATCCTGTGATAAATGCGTGTAATGGTTTTTACTGCGATAATTTCACTCCAAATAAACCTTACAAGCCTAGCCTGTGGACTGAGTCTTGGAGTGGCTGGTTTACAGAGTTTGGTGGCCCAATTTACCAGCGACCAGTTCAAGATCTAGCATTTGCAGTTGCTCGTTTCATACAAAAGGGTGGCTCATATGTAAATTACTACATGTACCATGGAGGAACTAACTTTGGACGCTCAGCTGGAGGTCCATTCATCACTACAAGCTACGACTATGATGCTCCTATTGATGAGTATGGTCTGATCAGAGAACCTAAATATGGTCATTTGAAGGAGCTTCATAAGGCTATTAAGCAATGTGAACATGCTTTGGTTTCTTCAGATCCTACTGTTACATCATTAGGAACGTATCAGCAGGCTCATGTATTCTCTTCAGGAACTGGAACATGTGCAGCTTTTCTAGCAAACTATCATACGACGTCTGCTGCTAGGGTGATGTTCAATAACAGGCACTATGATTTGCCTCCTTGGTCCATAAGCATCCTCCCTGATTGCACGACTGTTGTATTTAACACTGCTAGAGTGAGATTTCCGACATCACAAGTGCAAATGCTGCCTACCAATTCTAAATTGTTCTCGTGGGAGACCTATGATGAGGATCTATCTTCTCTTGTGGATAGTTCAATGATGACAGCTCCTGGACTCTTGGAACAGATAAATGTTACCAGAGACACAAGCGACTATCTATGGTACATAACCAGTGTTTACATAAGTTCATCAGAATCATTTCTTGGAGGAGGACACAAACCCAGCATTAGTGTGCAGTCTGCAGGTCATGCTGTTCATGTGTTTGTTAATGGGAAGTTTTCAGGCTCAGCTTTTGGTACAAGGGAACAGAGAAGTTGCACATTTAATGGGCCGGTCAACCTACGTGCTGGAACAAATAAAATTGCACTTCTCAGTGTAGCTGTTGGATTACCGAATGTTGGCCTGCATTTTGAAACATGGAAGACAGGGATCACAGGTCCTGTTTTGCTATATGGTCTTGAGCAAGGAAAGAAAGATCTAACATGGCAGAAATGGTCTTACCAGATTGGCTTAAAGGGAGAGGCTATGAATTTGGTGTCCCCGAAGGGGGTCTCATCTGTTGATTGGATTCAAGAGTCACTAGCTACCCAAAACCAGCAGCAATTGAAATGGCATAAGGCTTATTTCAACGCACCAGAGGGAAACGAACCACTGGCTTTGGACTTGGGAACTATGGGAAAGGGTCAAGTGTGGATCAACGGGCAGAGCATAGGAAGATATTGGATGGCTTACGCAAAGGGTGACTGTAATTCCTGTAGCTATGCAGGGACATTCCGTTCCGTAAAGTGCCAACTTGGCTGCGGACAACCAACCCAACGATGGTACCATGTTCCAAGGTCGTGGTTGAAGCCAACAAAGAACTTGATAGTAATTTTTGAAGAATTAGGAGGGAATCCTTGGAAAGTATCTCTGGTAAAGAGAAGGGTGCATTCAAAGAATAAAGAGTAG 2205 0.449 METSSVSKLLIFFFAVLFVGSELIHCTVTYDRKAIVINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKTVQKVGLYVHLRIGPYVCAEWNFGGFPIWLKYVPGISFRTDNGPFKAAMRGFTQKIVHMMKNEKLFQSQGGPIILSQIENEYGAESRALGAAGHAYTNWAANMAVGLGTGVPWVMCKEDDAPDPVINACNGFYCDNFTPNKPYKPSLWTESWSGWFTEFGGPIYQRPVQDLAFAVARFIQKGGSYVNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIREPKYGHLKELHKAIKQCEHALVSSDPTVTSLGTYQQAHVFSSGTGTCAAFLANYHTTSAARVMFNNRHYDLPPWSISILPDCTTVVFNTARVRFPTSQVQMLPTNSKLFSWETYDEDLSSLVDSSMMTAPGLLEQINVTRDTSDYLWYITSVYISSSESFLGGGHKPSISVQSAGHAVHVFVNGKFSGSAFGTREQRSCTFNGPVNLRAGTNKIALLSVAVGLPNVGLHFETWKTGITGPVLLYGLEQGKKDLTWQKWSYQIGLKGEAMNLVSPKGVSSVDWIQESLATQNQQQLKWHKAYFNAPEGNEPLALDLGTMGKGQVWINGQSIGRYWMAYAKGDCNSCSYAGTFRSVKCQLGCGQPTQRWYHVPRSWLKPTKNLIVIFEELGGNPWKVSLVKRRVHSKNKE 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1990 734 FunFam Beta-galactosidase 591 731 - -
Glsi08g1990 734 FunFam Beta-galactosidase 23 343 - -
Glsi08g1990 734 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Glsi08g1990 734 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Glsi08g1990 734 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Glsi08g1990 734 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Glsi08g1990 734 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Glsi08g1990 734 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Glsi08g1990 734 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Glsi08g1990 734 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Glsi08g1990 734 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Glsi08g1990 734 Gene3D Glycosidases 24 344 - -
Glsi08g1990 734 SUPERFAMILY Galactose-binding domain-like 402 573 IPR008979 -
Glsi08g1990 734 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Glsi08g1990 734 FunFam Beta-galactosidase 446 583 - -
Glsi08g1990 734 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Glsi08g1990 734 SUPERFAMILY Galactose-binding domain-like 582 723 IPR008979 -
Glsi08g1990 734 FunFam Beta-galactosidase 292 420 - -
Glsi08g1990 734 SUPERFAMILY (Trans)glycosidases 26 344 IPR017853 -
Glsi08g1990 734 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Glsi08g1990 734 Gene3D - 601 733 - -
Glsi08g1990 734 Gene3D - 439 586 - -
Glsi08g1990 734 PANTHER BETA-GALACTOSIDASE RELATED 21 729 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1990 Glsi-ChrGlsi08 14016714 14020905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1990 5 728 Glycoside Hydrolase AT4G36360 73.655 0.0 1163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0181 10 1329559 1333626 Glsi08g1990 08 14016714 14020905 CCT
Glsi08g1990 08 14016714 14020905 Glsi08g1990 08 14016714 14020905 ECH