Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1978 ATGGAGTTGTGGATCGATACTGCGACGAACAATGAGGGAAGCAAAGATTCCATGGGTTGCATCCGGCTGGAGGGGGTGGGGAGCACCGAACCTAATTACAAGGAATCTGATGGCAGCCGAAAAGGAAAAGCAAAGGCTAAGAGTAAAGAGGAAACTCAGAAAAGTGGGGAAAAGCAGCAAGCTCTTCCTTTCTCTTTAAAACCATATAATATACCTATCATTATGGAATCTACCAATCTCCATCAGCTTCAAGACCAACCTCCGGCTGTCAAGGCTTCTTCTTTATTGACCCCATCTTGCTATGCGGTTGGAAGCAGCCATTCTTGGACGTCACCAAATATCACTTTAAATGCTGGTAATTTCAACCCAAATATCCAAGAAGCTAATCCCAGATCAAGAGCTGTAACGCACAAGAAGAATATTGGAGCCCCTCCTCTCAACGATTCTATGGTACAAGGTTTAGGTTATCACTGGGCAAGTGCTGCAGAGAGCTGCATGACCAGTCAGTCTGATCATGATTTAGACCTTCTGTATTCGAAGATAAAGGAAGAGATCTCAGATGTTTTCCCCAAATTCACTGAAATGCCAAACAGTACTTCGAGTATGGGAAAGAATGAGCATAAAGATTTGAATGCTCTTAGTGAAAAGCTCTTGCTCAAGACCCTTTCTTCCGGAGACTTCTACTCCACTAGCGCTCAAAATTTCGCCAGTTTTGGGGGTATGGGAGTACCAAGTAGAGGAAGCTTTAGCCAGATTTACCCCAGTATAAATGTTTCAAACTTAAACCAATCATCCCCACCAATGTCAAGCTCTTTGGATATGAACATGCAGTCCTCAGATCTGTTAATAACCTCTGCAAGATTTAATGGGGTTTTGAGCCAGCGTTCACAAGATAGTCCTGGCAGATTTACGGACAACCTTTCTTTTCGTCTCGATCATATGCAGCGCCCCATTGACAGGTCGTCATACAACTCCAGTAACCATTCACACTTTACCAACGGCTTGGTGGAAACAAAGAGGCCCAACACATTGGTGGAGTCGAAGGCTTCTCAATCTCAAACGGTACCAAAGAAATCACGAATGGAATCACGCTCGTCATGCCCACCATTTAAGGTTAGGAAAGAGAAACTAGGAGACAGGATTGCGGCTCTTCAGCAGCTGGTGGCTCCTTTTGGCAAGACAGATACGGCATCCGTCCTTATGGAGGCCATTGGATACATTAAATTTCTTCAAAACCAAGTCGAGACACTGAGCGTTCCATATATGAAGTCGTCCCGGAACCGGACCGACAGAGCGATGCAAGGGGGTTCAGCGACGTACGAGGCCCAGGAGGAAGCAAAGCTAGATCTTAGAAGCCGAGGCCTCTGTCTTGTGCCATTGTCGTGCATGTCCTACTTAACAGGTGACGGTGGCGGCGCAGGGTGGCAACAACCTGACTTTGGTGGAGCGACTTAG 1455 0.4625 MELWIDTATNNEGSKDSMGCIRLEGVGSTEPNYKESDGSRKGKAKAKSKEETQKSGEKQQALPFSLKPYNIPIIMESTNLHQLQDQPPAVKASSLLTPSCYAVGSSHSWTSPNITLNAGNFNPNIQEANPRSRAVTHKKNIGAPPLNDSMVQGLGYHWASAAESCMTSQSDHDLDLLYSKIKEEISDVFPKFTEMPNSTSSMGKNEHKDLNALSEKLLLKTLSSGDFYSTSAQNFASFGGMGVPSRGSFSQIYPSINVSNLNQSSPPMSSSLDMNMQSSDLLITSARFNGVLSQRSQDSPGRFTDNLSFRLDHMQRPIDRSSYNSSNHSHFTNGLVETKRPNTLVESKASQSQTVPKKSRMESRSSCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQNQVETLSVPYMKSSRNRTDRAMQGGSATYEAQEEAKLDLRSRGLCLVPLSCMSYLTGDGGGAGWQQPDFGGAT 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1978 484 Gene3D - 371 432 IPR036638 GO:0046983
Glsi08g1978 484 MobiDBLite consensus disorder prediction 344 361 - -
Glsi08g1978 484 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 371 423 IPR036638 GO:0046983
Glsi08g1978 484 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 361 410 IPR011598 GO:0046983
Glsi08g1978 484 MobiDBLite consensus disorder prediction 344 368 - -
Glsi08g1978 484 MobiDBLite consensus disorder prediction 34 56 - -
Glsi08g1978 484 CDD bHLH_AtbHLH_like 368 418 IPR045239 -
Glsi08g1978 484 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 227 464 - -
Glsi08g1978 484 MobiDBLite consensus disorder prediction 1 62 - -
Glsi08g1978 484 FunFam Transcription factor bHLH123 family 371 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1978 Glsi-ChrGlsi08 13925591 13929852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1978 98 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 43.627 1.36e-73 238