Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1962 ATGTCTACAGCAATACTCATGGTAGTGGATCCATCCGGCAAGGGAGACTTTGAGAAAATACAAGACGCTATTGATGCTGTGCCATCCAACAACACGGAACTGGTTTATGTACGGCTTAAGCCCGGCACATATCAAGAGAAGATACTTGTGCCTGTAGACAAGCCCTTCATTACTGTCACCGGATCTTCAGACGCAACTAACACAATCATCACATGGAACCAGAGCGGGGACATATTTGACTCACCAACTTTCACGGTCTTGGCTTCTGATTTTGAGGGGCGATACCTCACTATCCAGATGACTCTTGAAATAACTATACAGAATAGGTATGGGCGTGGAGCGAAAGCAGTGGCATTGAGGGTTCGGGGAGATAGGGTGGCATTTTCTGGGTGTAGAATTTTGTCTTTCCAGGATACCCTACTTGACGACGCTGGGAGGCACTACTACAATAATTGCTATATCGAAGGAGATGTGGACTTCATTTTCGGAAATGCAGCTTCCCTGTTTGAGAAGTGCCATGTGCATTCACTTTCAGAAGGAAATGGAGCAATCACAGCCCAAAGTAGGGGGTCAGCAGAGGAGGAGACGGGCTTCACCTTCTTGGGTTGCCAAATCACCGGCGTAAAAACTGCTCTACTTGGAAGACCTTGGGGTGCTTATGCTAGAGTTGTTTTTGCCTACACCTTCATGTCAAACGCAGTCCTGCCTCAGGGCTGGGATGACTGGGGAGACTCTTCAAAACAAAGTACGGCTTACTACGGAGAATACAGGAGTTATGGAGACGGAGGCAGCACAGGGCGAAGGGTCCAGTGGTCACACCAACTTACTGCCCAACAAGCCCACCCCTTCTTGACCAACGGCGTTATTAATGGCAAAACCTGGATTAGAACCGCCCCGGTCATTTTCAAGCCATTCTCGCCTCCCAATTCCTCCAATTTTGGTGCACGCTAG 951 0.4869 MSTAILMVVDPSGKGDFEKIQDAIDAVPSNNTELVYVRLKPGTYQEKILVPVDKPFITVTGSSDATNTIITWNQSGDIFDSPTFTVLASDFEGRYLTIQMTLEITIQNRYGRGAKAVALRVRGDRVAFSGCRILSFQDTLLDDAGRHYYNNCYIEGDVDFIFGNAASLFEKCHVHSLSEGNGAITAQSRGSAEEETGFTFLGCQITGVKTALLGRPWGAYARVVFAYTFMSNAVLPQGWDDWGDSSKQSTAYYGEYRSYGDGGSTGRRVQWSHQLTAQQAHPFLTNGVINGKTWIRTAPVIFKPFSPPNSSNFGAR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1962 316 Gene3D - 4 304 IPR012334 -
Glsi08g1962 316 FunFam Pectinesterase 1 299 - -
Glsi08g1962 316 SUPERFAMILY Pectin lyase-like 4 302 IPR011050 -
Glsi08g1962 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 4 296 - -
Glsi08g1962 316 Pfam Pectinesterase 8 291 IPR000070 GO:0030599|GO:0042545
Glsi08g1962 316 ProSitePatterns Pectinesterase signature 2. 154 163 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1962 Glsi-ChrGlsi08 13832380 13833553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1962 6 295 Carbohydrate Esterase AT5G47500 39.000 1.31e-80 247