LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g1947	ATGCTCTGTTTGTTGTTCCTTTTCTCTTCTCTTCATGTTTCTAGTGTTCTTGAAAAATCTGAATCATGTCCACTTCAGTCCAAGCTCGATCACACTCCGAATCAACAAGTTTTGTTAAACAAACTGGAAGAATTAGTGAGAAACCTTAGTGATATAATTACAAGGTTAGAATCCAAGCTATCGGAGCCTCGGAAGGTGGGTGATGAGGAGGAAAAGGGTAAGTTTACTCATAGAAAGCATGATGTTGAAGATGGGGAGAGATCGAGTGGGGTTTCCGTGACTAAGTACTCTCCATTTTGGTCTGAGAGGTTCCAGTTTGCGTCGGCTGTGAAATTAGATGCCGACGCCACCTGTATAAATGTTCTGCCATTTCAGGACTACGAGGGCCTGAGTAAGTATGTTGCAGTTGGGGATGAGAGAGGCAGAGTGTATGTATTCCTGAGAAATGGAGATCTTTTGGTTCAGCTTTATACCTCTGTGGACTCGCCCGTCACCGCAATGCTTTCCTACACTTCCGCTTTCAAGAATGAGAGTTTCGTCGTAACAGGGCATGGAAATGGTGCAATCTTCATACATCGAATTTGGGAGAGATCGAACGGAGAAGATTGGAGTTCCATTTTCATGGAAAATGTTGGCAAGTTTGTGTCACCCGAAAGTGAAGAGGACGGATTGCCCGTAACCATCTTGGAAGTCCATTATGTTGGTAGGATAAAGTACATTTTGTCAACTGATAGTAGTGGGAAGATTAAGGTTCATTGGGAAAATGGCACATTTTATGGTTCTGTCATGCCAACAAGTAGGCCAATAGCATTCTTGAAGCAACGGCTTTTGTTTTTGACAGAAACTGGTGCGGGCTCATTGGATTTGAAGGGCATGAAAGTTAGAGAATCTGAATGTGAAGGTTTAAACCGTTCCCTTGCTCGAAATTATGTTTTTGATGCCACAGAGCGTTCCAAAGCATATGGGTTCACATCAGAGGGTGATCTAATCTATGTTTTGTTGCTGGGAGATGAAATGAACTTCAAATGCAGGGTTAGATACAAGAGGAAGTTTGAGGTGAATGAGCCTCTTGCTTTCCAGGCAATTAGGGGGTATTTGCTAATTGTTAGCCCAAGCAAGGGTTTTGTGTATAATGTTTCATCTCAGCATTATGCGAGAATCGGTGTCCCTCGGCTTCTATTCTCTTCAAGTCTTGATGAGATCAGATCGACATTCTTGAATTATGCAACCATGAATTTGGATTCAGAAAGAAGAGTAATACCCTTGGTAGCTAGCGACCGAGAAAAGCTCATTATCATGGGCCTTGGAGGTGGGTATGTTGGAATCTATCATTCTAATCTCCCTGTATATAAAGGAGAGTCCAATACCACGCTGTGGTACAGTCCCTTATTGTTGTTCCTCCTTTTTCTGTTTGGAGCGTGGCATTTTTTTGCCAAGAAGAAGGAAGCACTTACATCGTGGGGACCAAACGACCCTTTTAGCTCCACATCAGCCACAAATAGTGCTCCTTTGGGATCAGGCTCTGGAGACAGATCTTTCGTAGACTCTTCAAGAAGCAGTGAAGTGATGGATCTTAGAAGTGGAGCTCTCAGGGGTCCATCAAGAAGGTATGGTTCTCCTTCGAGATATCCCGGCGGGTCAGCAAGTTCTTATAGGCTTAGTTCTGCAGATCACAACTCCAGGCCAGCCTCAGTTGATCCAGACTTTCGATCAACATCAGAGATCAAATTTAGGGCCTCAACTATGGAACCTCCGGGCTTCTCAAAAAGAAGGGACAATCTATTTAGCAAGATGAGGCAGCTCACATCAATACTAATTGAATTTGAAGATGAGCAAAATGTGAATAAGTCTAAGGAAAAGGGAAAATTATTTTTTACTCCTGTTTTGCATCCTCAGTTGATTGGTTCTGCTTCTACGCGTTTTACATATTTGAAAGCGATACGTGCTATGGCGGAGCTTGAGAATCCTTCTTCAATGGCAGTTTCTACAGCTTCCGGAGAAGCAAGCGTTTCATCCGCTGGTTTCCAAAACGCTCCTCATGAACTACCACCACCAAAAAAGAAGCGAAACCTCCCCGGAATGCCAGATCCGGATGCTGAGGTGATCGCTTTGTCGCCCAAAACACTGTTGGCGACGAACCGTTTTGTATGCGAGATCTGCAATAAAGGATTTCAACGGGACCAGAACCTGCAGCTTCACCGACGAGGCCATAACCTACCATGGAAGCTCCGGCAGCGAACCAGCAAGGAAGTTCGTAAAAGAGTCTACGTGTGCCCCGAGCCTTCCTGCGTCCACCATAACCCGTCGAGAGCGCTAGGTGACCTCACCGGCATTAAGAAACATTTTTGTAGAAAACATGGCGAAAAGAAGTGGAAATGCGAGCGTTGCACTAAGAAATATGCCGTGCTGTCTGATTGGAAGGCCCATATGAAGACTTGCGGAACTAGAGAGTACAAATGTGACTGCGGCACCTTGTTCTCTAGGAGGGACAGCTTCATTACGCACAGGGCTTTTTGCGATGCCTTAGCGGAGGAGAGTGCCAGAGCTCAAACCCTAGCCATTGGTGACGGCTCCGAGGGGAATCCTGACAACAAGGTTGCTTTGGCTTCACCCCCGCAGCCGCCACTTACTCCGACTACGTCTGTGGTGTCTCCAGCTTTGTCCATTCAGAGCTCAGAAGTTTCGGAAAATCCAATCAGGCTGTCGCCGCGCTCTTCAAACGTAACGTGTTTATCGACCCCAGTCCCAAACGGCACTCCCTCCAATTCTACCAGTGTTTTTGCCAGTATATTTGCACCCTCGCCTGCGGCTCCTTCCCGAACATCATCCACGTTATCCTCATATTCTAATCTGATGTCCAGCTTGGCTCGCTCGGATTGCCCTCCTACTACCCCAGCGATATCTGCCATAGAACCCACATCCCTGTCTCTCTCCACATCACTTTATCTCTCCAATAATGATTCCTCCCTGTTCCCGGACCAGCACGACCCTCGGCACTATACTGCATCTCCACAGCCTGCATTGTCTGCCACTGCATTACTCCAAAAGGCGGCTCAAATGGGTTCTGCAGCATCTAATGCATCGTTGCTACGGGGTTTAGGCTTAGCAACAGCATCTTCCTCTGGACAGGATGATAGTTTCTCAGCACAATGGAATAGCCATGTAAAGACAGAGAATGACTCGGTGACAGATGGCCTTGGGCTTGGAATTCCCTCTGTTGGGAATGCGGGTTTCGCAGATATGATGATGGGCTCGTCTTCGCCATTTGGTGGACAACCCATGACTCGTGATCTTCTCGGGCTAAGCATTGGTGGCGGGGCTAGCAGGGATCTTTCTGCTTTACTCAACTCTTTTGGCGGGAGAATCCATGTTGCAGAAACATCAACGGGAGGGAGAAGTTCCCCGTCAGAAAATTAG	3417	0.4659	MLCLLFLFSSLHVSSVLEKSESCPLQSKLDHTPNQQVLLNKLEELVRNLSDIITRLESKLSEPRKVGDEEEKGKFTHRKHDVEDGERSSGVSVTKYSPFWSERFQFASAVKLDADATCINVLPFQDYEGLSKYVAVGDERGRVYVFLRNGDLLVQLYTSVDSPVTAMLSYTSAFKNESFVVTGHGNGAIFIHRIWERSNGEDWSSIFMENVGKFVSPESEEDGLPVTILEVHYVGRIKYILSTDSSGKIKVHWENGTFYGSVMPTSRPIAFLKQRLLFLTETGAGSLDLKGMKVRESECEGLNRSLARNYVFDATERSKAYGFTSEGDLIYVLLLGDEMNFKCRVRYKRKFEVNEPLAFQAIRGYLLIVSPSKGFVYNVSSQHYARIGVPRLLFSSSLDEIRSTFLNYATMNLDSERRVIPLVASDREKLIIMGLGGGYVGIYHSNLPVYKGESNTTLWYSPLLLFLLFLFGAWHFFAKKKEALTSWGPNDPFSSTSATNSAPLGSGSGDRSFVDSSRSSEVMDLRSGALRGPSRRYGSPSRYPGGSASSYRLSSADHNSRPASVDPDFRSTSEIKFRASTMEPPGFSKRRDNLFSKMRQLTSILIEFEDEQNVNKSKEKGKLFFTPVLHPQLIGSASTRFTYLKAIRAMAELENPSSMAVSTASGEASVSSAGFQNAPHELPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCTKKYAVLSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARAQTLAIGDGSEGNPDNKVALASPPQPPLTPTTSVVSPALSIQSSEVSENPIRLSPRSSNVTCLSTPVPNGTPSNSTSVFASIFAPSPAAPSRTSSTLSSYSNLMSSLARSDCPPTTPAISAIEPTSLSLSTSLYLSNNDSSLFPDQHDPRHYTASPQPALSATALLQKAAQMGSAASNASLLRGLGLATASSSGQDDSFSAQWNSHVKTENDSVTDGLGLGIPSVGNAGFADMMMGSSSPFGGQPMTRDLLGLSIGGGASRDLSALLNSFGGRIHVAETSTGGRSSPSEN	1138

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g1947	1138	MobiDBLite	consensus disorder prediction	495	523	-	-
	Glsi08g1947	1138	FunFam	protein indeterminate-domain 5, chloroplastic-like	769	848	-	-
	Glsi08g1947	1138	MobiDBLite	consensus disorder prediction	63	88	-	-
	Glsi08g1947	1138	MobiDBLite	consensus disorder prediction	495	568	-	-
	Glsi08g1947	1138	SMART	c2h2final6	715	737	IPR013087	-
	Glsi08g1947	1138	SMART	c2h2final6	756	786	IPR013087	-
	Glsi08g1947	1138	SMART	c2h2final6	791	811	IPR013087	-
	Glsi08g1947	1138	MobiDBLite	consensus disorder prediction	63	92	-	-
	Glsi08g1947	1138	Gene3D	Classic Zinc Finger	695	760	-	-
	Glsi08g1947	1138	Gene3D	Classic Zinc Finger	769	849	-	-
	Glsi08g1947	1138	FunFam	protein indeterminate-domain 12-like	694	762	-	-
	Glsi08g1947	1138	MobiDBLite	consensus disorder prediction	670	693	-	-
	Glsi08g1947	1138	MobiDBLite	consensus disorder prediction	543	567	-	-
	Glsi08g1947	1138	Coils	Coil	39	59	-	-
	Glsi08g1947	1138	Pfam	Zinc finger, C2H2 type	715	737	IPR013087	-
	Glsi08g1947	1138	ProSitePatterns	Zinc finger C2H2 type domain signature.	717	737	IPR013087	-
	Glsi08g1947	1138	PANTHER	OS06G0115200 PROTEIN	11	597	IPR045288	-
	Glsi08g1947	1138	SUPERFAMILY	beta-beta-alpha zinc fingers	714	812	IPR036236	-
	Glsi08g1947	1138	ProSiteProfiles	Zinc finger C2H2 type domain profile.	715	737	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g1947	Glsi-ChrGlsi08	13754703	13762589	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g1947	662	1101	IDZ Gene Family	AT5G66730	54.054	6.38e-140	430

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Glsi08g1947		zf-C2H2	0.013	CL0361