Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1931 ATGAATATGGAAAACGTAATCCCCATATGCCAAACCCAATTGATTGCACACGCACTGAACAAAGGAAAGGAATCTCAAAAGGCAAATAAACTTTTCCTCGCCGGCTTCCACTTTGCTGTCTCTCGCACGCTCAATTCTGATTTCGACCTTTCTATTTTGACTTCGAGGATCGATCGCCCACTCTTTGTTTCTGCAGTTTCGTTCAATCCCCTTCTTGCGGACGCCGGGGAAGAAGAGCCTCATCGTTTACGCGGGTCACTGTCTTCGAAATAGCATCTGAAGGTTGGGGTATTATTGATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCCTACTCCCGCAACAATAATAACAATGATGCGGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCACAGGATCCTATAATTACTTTATGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCATTCACAGTCGCGAGAGTGCCCAGTATGCAAGGCCCTCATCGAGGAGGAGAAGTTGGTTCCCTTATACGGGAGAGGAAAGACATCAACTGATCCAAGATCCAAATCTATTCCTGGTGTTAACATCCCACATCGTCCAGCTGGTCAGAGACCTGAAACTGCTCCTCCACCAGAATCAAATCATATTCCTCAACATGGGTTTGGATTTATGGGTGGGTTGGGAGGGTTTGCACCAATGGCAACAGCAAGATTTGGGAATTTCACATTGTCTGCAGCATTCGGTGGTTTTATACCATCCTTATTTAATTTCCAATTACATGGGTTTCATGATGGAACTATGTATGGTGGAGCAGCTGGTTTTCCTTATGGATTCTCTAATTCATTTCATGGTGGCCATGTTCATCGATATGCCCAGTATCCAGGTCAAGGACAACAAGATTATTATCTGAAGAGGCTGCTTCTGTTTGTTGTTTTTTGTGTTGTTCTTGCATTTATTTGGCAATAG 987 0.4417 MNMENVIPICQTQLIAHALNKGKESQKANKLFLAGFHFAVSRTLNSDFDLSILTSRIDRPLFVSAVSFNPLLADAGEEEPHRLRGSLSSKXHLKVGVLLMASGFGESTSRSPPSPSYSRNNNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNHIPQHGFGFMGGLGGFAPMATARFGNFTLSAAFGGFIPSLFNFQLHGFHDGTMYGGAAGFPYGFSNSFHGGHVHRYAQYPGQGQQDYYLKRLLLFVVFCVVLAFIWQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1931 328 ProSiteProfiles Zinc finger RING-type profile. 131 172 IPR001841 -
Glsi08g1931 328 CDD RING-HC_AtRMA-like 129 173 - -
Glsi08g1931 328 Pfam Zinc finger, C3HC4 type (RING finger) 131 171 IPR018957 GO:0046872
Glsi08g1931 328 SUPERFAMILY RING/U-box 125 177 - -
Glsi08g1931 328 MobiDBLite consensus disorder prediction 185 222 - -
Glsi08g1931 328 ProSitePatterns Zinc finger RING-type signature. 146 155 IPR017907 -
Glsi08g1931 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 185 IPR013083 -
Glsi08g1931 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 112 324 IPR045103 GO:0005783|GO:0006511|GO:0061630
Glsi08g1931 328 SMART ring_2 131 171 IPR001841 -
Glsi08g1931 328 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 115 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1931 Glsi-ChrGlsi08 13686452 13688948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1931 129 311 C3H Transcription Factor Family AT1G19310 69.948 8.44e-90 266