Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1919 ATGCAACGATCAAGGTCGCAGCGCATACGTGACACACCCAAACCTTTCTATCCATCTTCCGCGCTTTCCGGTATGCAATTTCACCGGCGATCGGGACCTCAAACGACAATGTTGAGGGACGAAAGTGTGGGCTCCAGGAGCGCAAGGCATAGCGCTACCGTTTCTACGGTGTCCAATAAAGTCCTGGTGGCCGTTAAGGCGGAAAGGGTGATCTCCAACACCGCATTAGCCTGGGCACTCACTCACGTCGTTCACTCTAGTGACTGCATCACCCTGCTCGCTGTATATTGTGGCGAGAAAACTGGAAGAAGATTCTGGAATTTTTCGAGATTGGCTGGAGATTGTACTAACGGACGCCGGGAAAAGTTGCCGGAGCGGATTTGTGAAATTTCCGAGTCTTGCGCTCAAATGGTTCTTCAGCTGCACAATCAAATTGAGGTCAGGGTGAAGATTAAGGTGGTCACAGGTACGCCCAGTGGTGCGGTGGCGACTGAAGCAAGATGCAGTGGGTGCAACTGGGTCATACTGGACAAGAAGTTAAAACAAGAGGCGAAGCATTGCATGGATGAACTGCACTGTAGCATTGTGGTGATGAACGGTTCACAGCCAAAAGTTCTTAGGCTTAACTTAGGATGTTCTGATGAACTCCAAACCCCCTTTTTCTCTGCTGCTTCTTCACCAGGTATAGATACTGGAAAGCTACAAGGTCACAGATTGAAGCATTCCACTCCCGTGAGTAGCCCTGACGGCGGAACTTCCAATACAATTTCCACTGGAGTGAATTCAATATCAAGTTCTGAAACAGTGACTTCTTTTTTTCTGGTCTATGAACAAAATCCTCTGTTCGAGGGTCAGGGGCCACAGAGAAGGAAACACAGACCAATCAACGAAACAAAAGATTTCGATGACCAGCCACCATTAGACTTCGATTTGGAAAGGGAAAGGACTCTGAGTCTGAGAAAACCCCAGACGTCATCTGTGGCCAGTGATAACAAGGGTATAGTTTGGATTCCTCAAAACTACGTTGTCGATACGAAGCCTCCAATAACCAATAACGACAGAATTACCGAAAGAACTAAATCTCCGACTTCTAAAACTTTACTTGAGAGCTTTGTACATTGTGATCAAGAGATGAGAACTAACAGACTTGGGCTTAAGCAAGCTCAAAGTAGAAGTAATTTTGAGAACTCGGGCATGAGACATACTATTCCTTTGGGCAGAACTTCCTCTGTACCTCCTCCTCTATGTTCACAGTGTCAGAACAAAGCACCAGTTTTTGGAAAACCTCCAAGACGCTTCTCTTACGAAGAGATAGAGGAAGCTACTGATATGTTCTCAGATGTAAATTTTTTGGCTGAAGGTGGATTTGGTGTGGTTCACAAGGGAGTGCTAAGAGATGGCCAGGTTGTCGCAGTAAAACAGTTGAAGTTTAGTGGCTCCCAAGCAGATCTTGATTTCTGCAGAGAAGTCCGGGTATTGAGCTGTGCACAACACAGAAATGTTGTGTTGTTGATAGGATTTTGCGTTGAAGGCAAATTGAGGATATTAGTTTATGAGTATATATGCAATGGATCCTTGGAGCTCTATCTACATGGAAACAAGAGAACACCTCTAGATTGGAACTCACGCTTGAAGATAGCAATAGGTGCTGCGCGAGGTTTACGCTACCTTCATGAAGATTGTAGAGTGGGTTGTATAGTGCACAGAGATCTTCGACCCAAAAATATCCTCTTAACCCATGATTTTGAGCCTATGGTGGCGGATTTTGGCCTTGCTAGGTGGCAGTCGGAATGGAATATAACTACTGACGACCGAGTTATTAGAACTTCAGGGTACCTCGCGCCGGAGTATCTTGATGCTGGAAATCTTACATATAAAGTAGATGTGTATGCATTTGGAATTGTCTTATTAGAATTAATATCAGGTCGAAGAATTAGTGAGTTGGAACATTTCAATGGACACTCGTTTCTTGCCGAATGCTTTCACCCTCTGCGCATGTTAGAGCCCAATCATATTTTACAAAATGTTCAATTTCTCAATCCGTGCTTAGATTTTGAGGCGTCACCGGAATTTAATCTTCAATTGCTAGCAATGGCCCGAGCTGCTTCGCTGTGTCTACGTCTAGATCCTGATGACAGACCCCTAATGTCAAAGATCCTCGGAGTGCTGGAAGGGGGCGATTCAGTTCGTCCTCTCGGTTTGGACCTAAACTCAGTCGGTAACAGGAGTGGCCATCTACGCGGGTTGACGTCCCACTCTCAACCTAAAAGTACAAGAAGTCATTCTCGTAGGCTATCACATTGA 2304 0.454 MQRSRSQRIRDTPKPFYPSSALSGMQFHRRSGPQTTMLRDESVGSRSARHSATVSTVSNKVLVAVKAERVISNTALAWALTHVVHSSDCITLLAVYCGEKTGRRFWNFSRLAGDCTNGRREKLPERICEISESCAQMVLQLHNQIEVRVKIKVVTGTPSGAVATEARCSGCNWVILDKKLKQEAKHCMDELHCSIVVMNGSQPKVLRLNLGCSDELQTPFFSAASSPGIDTGKLQGHRLKHSTPVSSPDGGTSNTISTGVNSISSSETVTSFFLVYEQNPLFEGQGPQRRKHRPINETKDFDDQPPLDFDLERERTLSLRKPQTSSVASDNKGIVWIPQNYVVDTKPPITNNDRITERTKSPTSKTLLESFVHCDQEMRTNRLGLKQAQSRSNFENSGMRHTIPLGRTSSVPPPLCSQCQNKAPVFGKPPRRFSYEEIEEATDMFSDVNFLAEGGFGVVHKGVLRDGQVVAVKQLKFSGSQADLDFCREVRVLSCAQHRNVVLLIGFCVEGKLRILVYEYICNGSLELYLHGNKRTPLDWNSRLKIAIGAARGLRYLHEDCRVGCIVHRDLRPKNILLTHDFEPMVADFGLARWQSEWNITTDDRVIRTSGYLAPEYLDAGNLTYKVDVYAFGIVLLELISGRRISELEHFNGHSFLAECFHPLRMLEPNHILQNVQFLNPCLDFEASPEFNLQLLAMARAASLCLRLDPDDRPLMSKILGVLEGGDSVRPLGLDLNSVGNRSGHLRGLTSHSQPKSTRSHSRRLSH 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1919 767 ProSiteProfiles Protein kinase domain profile. 445 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1919 767 MobiDBLite consensus disorder prediction 27 51 - -
Glsi08g1919 767 MobiDBLite consensus disorder prediction 234 256 - -
Glsi08g1919 767 SMART tyrkin_6 445 723 IPR020635 GO:0004713|GO:0006468
Glsi08g1919 767 MobiDBLite consensus disorder prediction 286 308 - -
Glsi08g1919 767 Pfam Protein tyrosine and serine/threonine kinase 451 686 IPR001245 GO:0004672|GO:0006468
Glsi08g1919 767 MobiDBLite consensus disorder prediction 240 256 - -
Glsi08g1919 767 Gene3D Transferase(Phosphotransferase) domain 1 521 730 - -
Glsi08g1919 767 FunFam Os07g0541700 protein 521 609 - -
Glsi08g1919 767 PANTHER OS01G0750732 PROTEIN 368 728 - -
Glsi08g1919 767 MobiDBLite consensus disorder prediction 744 767 - -
Glsi08g1919 767 MobiDBLite consensus disorder prediction 283 308 - -
Glsi08g1919 767 Gene3D Phosphorylase Kinase; domain 1 413 520 - -
Glsi08g1919 767 ProSitePatterns Tyrosine protein kinases specific active-site signature. 566 578 IPR008266 GO:0004672|GO:0006468
Glsi08g1919 767 SUPERFAMILY Protein kinase-like (PK-like) 425 723 IPR011009 -
Glsi08g1919 767 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 417 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1919 Glsi-ChrGlsi08 13578585 13583526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1919 399 719 Trihelix Transcription Factor Family AT1G68690 42.638 1.32e-72 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Glsi08g1919 PK_Tyr_Ser-Thr 1.6e-42 CL0016