Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1905 ATGGAAGCAATCAACAGATGTTCATCTTCCACTTCTTCCTCCGGCTCTTTCTCTTCTGGGTCTTCCTTATCGAGCAAGCCTCCAAGGAATTCTAACAAACCCGACAGAATCAAAGGTCCGTGGAGTGCTGAAGAAGACCAGATTTTGACCCGCCTCGTGGAAAAATACGGGCCCCGGAACTGGTCCTTGATAAGTCGTTACATAACGGGCAGGTCTGGCAAGTCGTGCCGGCTAAGATGGTGTAACCAGCTGAGCCCCAGCGTGGAGCATCGCCCATTTTCTCCGGAAGAGGACGAGACTATCTTAGCCGCCCATGCCCAGTACGGTAACAGGTGGGCCACCATCGCCCGGCTGCTCCAGGGTCGGACCGATAATGCAGTAAAGAACCACTGGAATTCCACGCTGAAGAGAAGGGGGAGGCGACAGCGGGTGGATGGAGGAGTTGTTTCGAACGAGAGGATCGGCTCTTCGAGATCCGTGCAGCCGTGCATGGGATGGGAAAATGACCCATTGACCGCACTGACTCTGGCGCCGCCGGGGAATGGTGGCAGCAATGATCGGCCAGCTTCGGAGAGTGTGCCGGCGGGGTTTTGGGATGTAATGAGAGATGTGATCGCGAAGGAAGTGAGAGAGTATGTGTCCTCCACGTTTTCTGAGAATTCGGGTTTCCATTGA 675 0.5481 MEAINRCSSSTSSSGSFSSGSSLSSKPPRNSNKPDRIKGPWSAEEDQILTRLVEKYGPRNWSLISRYITGRSGKSCRLRWCNQLSPSVEHRPFSPEEDETILAAHAQYGNRWATIARLLQGRTDNAVKNHWNSTLKRRGRRQRVDGGVVSNERIGSSRSVQPCMGWENDPLTALTLAPPGNGGSNDRPASESVPAGFWDVMRDVIAKEVREYVSSTFSENSGFH 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1905 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 88 IPR017930 -
Glsi08g1905 224 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Glsi08g1905 224 MobiDBLite consensus disorder prediction 1 41 - -
Glsi08g1905 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 139 IPR017930 -
Glsi08g1905 224 FunFam MYB transcription factor 38 89 - -
Glsi08g1905 224 SMART sant 89 137 IPR001005 -
Glsi08g1905 224 SMART sant 37 86 IPR001005 -
Glsi08g1905 224 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Glsi08g1905 224 CDD SANT 92 135 IPR001005 -
Glsi08g1905 224 Gene3D - 92 148 - -
Glsi08g1905 224 PANTHER MYB PROTEIN-RELATED 38 170 - -
Glsi08g1905 224 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Glsi08g1905 224 Pfam Myb-like DNA-binding domain 41 99 - -
Glsi08g1905 224 CDD SANT 40 82 IPR001005 -
Glsi08g1905 224 MobiDBLite consensus disorder prediction 1 30 - -
Glsi08g1905 224 Gene3D - 37 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1905 Glsi-ChrGlsi08 13505722 13506396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1905 35 138 MYB Transcription Factor Family AT3G50060 82.692 2.42e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g1905 Myb_DNA-bind_6 2.9e-18 CL0123