Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1897 ATGCAATCAAACGGCTCTGATTCCCAACAACAACAACAAACGGAGCAGAATCAACGGCAACAGCAAACGCAGACGCAGACGCAGCCGCAGCCGCAGCCGCCACCGCAGCCACTACCACTACCACAGCAGTGGATGCCGATGCAATACCCTGCGGCGGCTATGGTAATGCAGCATCACATGTTGCCACCTCAACATTATGCGCCGCCGCCGCCGCAGCCCTATATGCCTTACCATCAGTATCAGCAGTTACCGCATGTGCCGCACGTACAGCAGCATCAGCCTCAGGGATCGAGCGGCGAGAACAAGACGATCTGGGTCGGCGATTTACATCATTGGATGGATGAAAATTATCTCCATCGCTGCTTCGCTTCCACGGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTCGTTGAATTCTATTCACATGCCACAGCCGAGAAAGTTTTACAGAACTATGCTGGCATTTTGATGCCCAATACAGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCTGAGAATGTTCCTGATCTTTCTATTTTTGTGGGAGATTTAGCAGCAGATGTTACGGATAGCATGTTGCATGAAACTTTTGCTAGTAGATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGCTTCGTCAGGTTTGGAGATGATAGTGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCTATCAACAAGGAGGCCATGTGTCAAATGGCACATCCAACCAATCTGAAGTAGATTCAACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTACAGACGAAGATCTCAGGTATCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGATTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACAATGATTGGCAAACAAACGGTTCGTCTTTCTTGGGGGCGCAATCCAGCAAATAAGCAGTTTAGAGTGGATTTTGGCAACCCTTGGAGTGGGGCATATTATGGAGGCCCTGTTTATGATGGTTATGGATATGCTTTGCCATCTCCTCATGACCCAAGCATATATGCTGCTGCGTATGGGGCTTACCCTGTGTATGGAGGACACCAGCAGCAAGTAAGCTGA 1296 0.4707 MQSNGSDSQQQQQTEQNQRQQQTQTQTQPQPQPPPQPLPLPQQWMPMQYPAAAMVMQHHMLPPQHYAPPPPQPYMPYHQYQQLPHVPHVQQHQPQGSSGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSENVPDLSIFVGDLAADVTDSMLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDSERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQGGHVSNGTSNQSEVDSTNTTIFVGGLDPNVTDEDLRYPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQFRVDFGNPWSGAYYGGPVYDGYGYALPSPHDPSIYAAAYGAYPVYGGHQQQVS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1897 431 FunFam Polyadenylate-binding protein RBP47 286 403 - -
Glsi08g1897 431 FunFam polyadenylate-binding protein RBP47 isoform X2 53 191 - -
Glsi08g1897 431 MobiDBLite consensus disorder prediction 275 297 - -
Glsi08g1897 431 MobiDBLite consensus disorder prediction 1 27 - -
Glsi08g1897 431 MobiDBLite consensus disorder prediction 28 43 - -
Glsi08g1897 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 182 IPR000504 GO:0003723
Glsi08g1897 431 FunFam Polyadenylate-binding protein RBP47C isoform A 194 270 - -
Glsi08g1897 431 Gene3D - 101 181 IPR012677 -
Glsi08g1897 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 373 IPR000504 GO:0003723
Glsi08g1897 431 SMART rrm1_1 196 270 IPR000504 GO:0003723
Glsi08g1897 431 SMART rrm1_1 103 178 IPR000504 GO:0003723
Glsi08g1897 431 SMART rrm1_1 302 369 IPR000504 GO:0003723
Glsi08g1897 431 SUPERFAMILY RNA-binding domain, RBD 289 401 IPR035979 GO:0003676
Glsi08g1897 431 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 92 377 - -
Glsi08g1897 431 MobiDBLite consensus disorder prediction 273 297 - -
Glsi08g1897 431 Gene3D - 287 380 IPR012677 -
Glsi08g1897 431 MobiDBLite consensus disorder prediction 1 43 - -
Glsi08g1897 431 SUPERFAMILY RNA-binding domain, RBD 179 290 IPR035979 GO:0003676
Glsi08g1897 431 Gene3D - 183 286 IPR012677 -
Glsi08g1897 431 SUPERFAMILY RNA-binding domain, RBD 67 183 IPR035979 GO:0003676
Glsi08g1897 431 CDD RRM3_NGR1_NAM8_like 300 371 - -
Glsi08g1897 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 274 IPR000504 GO:0003723
Glsi08g1897 431 CDD RRM2_SECp43_like 194 273 - -
Glsi08g1897 431 CDD RRM1_SECp43_like 103 183 - -
Glsi08g1897 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 171 IPR000504 GO:0003723
Glsi08g1897 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 366 IPR000504 GO:0003723
Glsi08g1897 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1897 Glsi-ChrGlsi08 13444961 13448741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1897 104 381 Eukaryotic Initiation Factors Gene Family AT4G34110 29.225 8.69e-30 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0303 10 1988277 1991296 Glsi08g1897 08 13444961 13448741 CCT
Glsi08g1897 08 13444961 13448741 Glsi08g1897 08 13444961 13448741 ECH