Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1886 ATGGAAATCGACGTGGTCATGGAGCGCCGCAAAAAGACAGTGATAATGACCAGGTCGACAATGTCAACCAGGAGCGAACACCAGACGGTCCCCCTTTCGGTGCTTCTGAAGCGTGAATTGGCAAACGAGAAAATTGAAAAACCAGAAATTCTTCATGGTCAAGCCAGTCAGAGCAAAAAAGGAGAGGATTACACGCTACTGAAATCGGAATGCCAGAGGGTGGTGGGAGATGGGGTGTCTACATATTCTGTTTTTGCGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATGCCAAGGAGAATCTCTTAAATAATGTTTTAAGTGCGATTCCTTCAGATCTCAACAGAGATGAGTGGGTAGCAGCATTGCCCAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAAAATTTTCAACAGAAAGCACAAACATCAGGAACAACTGTAACCTTTGTGATTATAGAAGGATGGGTTGTTACCGTTGCATCTGTTGGCGATTCCCGTTGCATACTTGAACCTTTTGAAGGTGGGCTTTATTACCTGTCTGCAGATCATAGGCTAGAAACCAATGAAGAGGAGAGGGTGCGTATCACCACTAGTGGGGGTGAGGTTGGTCGGCTAAACACTGGTGGGGGCACGGAGATTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTTTCAAGATCCATTGGTGATTTGGATGTTGGTGAATTTATTGTTCCTGTACCTTACGTAAAGCAAGTGAAGCTGTCCACAGCTGGAGGCAGGCTTATTATCTGCAGTGATGGTGTTTGGGATGCTCTAACTGCAGAAACGGCCCTTGATTGTTGTCGTGGGTTGTCACCAGAGGCTGCAGCACCACATATTGTTAAAGAAGCTGTACAAGCAAAGGGACTTAGAGATGATACAACCTGCATCGTTATTGATGTGTTACCCCAGGAGAAACCACCTGCTCCTTTGACACAACCTAGGAAACCGGTAAAAGGAATGTTTAAGTCCTTGTTTCGGAGAAAATCTGCAGAATCATCTTCTTATAATGACAAAGAATACATGGAGCCTGATGTGGTAGAGGAACTGTATGAGGAAGGATCTGCTGTGCTTTCAGAGAGATTAGATACAAAATATCCACTCTGCAACATGTTCAAGTTGTTTATGTGTGCAGTATGTCAAGTTGAGATGAAACCTGGGGAGGGTATATCCATACACGTGGGTGTTCCGAACCCTGGAAAATTGCGTCCCTGGGATGGCCCGTTCCTTTGCTTAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGAACATCAGATAGACTTAGCAGCGGGAGTGACGAATGA 1347 0.4529 MEIDVVMERRKKTVIMTRSTMSTRSEHQTVPLSVLLKRELANEKIEKPEILHGQASQSKKGEDYTLLKSECQRVVGDGVSTYSVFALFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWVAALPRALVAGFVKTDKNFQQKAQTSGTTVTFVIIEGWVVTVASVGDSRCILEPFEGGLYYLSADHRLETNEEERVRITTSGGEVGRLNTGGGTEIGPLRCWPGGLCLSRSIGDLDVGEFIVPVPYVKQVKLSTAGGRLIICSDGVWDALTAETALDCCRGLSPEAAAPHIVKEAVQAKGLRDDTTCIVIDVLPQEKPPAPLTQPRKPVKGMFKSLFRRKSAESSSYNDKEYMEPDVVEELYEEGSAVLSERLDTKYPLCNMFKLFMCAVCQVEMKPGEGISIHVGVPNPGKLRPWDGPFLCLSCQEKKEAMEGKRTSDRLSSGSDE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1886 448 SMART PP2C_SIG_2 74 313 IPR001932 -
Glsi08g1886 448 Gene3D - 51 319 IPR036457 -
Glsi08g1886 448 SMART PP2C_4 41 311 IPR001932 -
Glsi08g1886 448 ProSiteProfiles PPM-type phosphatase domain profile. 51 313 IPR001932 -
Glsi08g1886 448 CDD PP2Cc 59 313 IPR001932 -
Glsi08g1886 448 FunFam probable protein phosphatase 2C 12 52 319 - -
Glsi08g1886 448 Pfam Protein phosphatase 2C 72 297 IPR001932 -
Glsi08g1886 448 PANTHER PROTEIN PHOSPHATASE 33 312 IPR015655 GO:0004722|GO:0006470
Glsi08g1886 448 SUPERFAMILY PP2C-like 58 313 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1886 Glsi-ChrGlsi08 13359929 13365488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1886 21 447 PP2C-type Phosphatase Gene Family AT1G47380 81.075 0.0 731
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0322 10 2092111 2096522 Glsi08g1886 08 13359929 13365488 CCT
Glsi08g1886 08 13359929 13365488 Glsi08g1886 08 13359929 13365488 ECH