Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1878 ATGGACGGTTATGATGGGACTGTGAGGCCTGGAGCTCTTCGCTCGAACTATGATCGGAGTGAACTTGATTCGGGCCCCGATGTTTCAGTTTCTTCTCCGGTCACCAGACAGAAGGCCGCTGCCGCTAAGCAGTTCATAGAAAATCATTACAAGAATTATCTCCAAGGATTGCAGGATCGTAAAGAGAGACGTAGAGCACTTGAAAGGAAGGCACAAGAAGCTCAAGTATCAGTTGAAGAACAAGAGGAAATGATGAGGAATTTGGAGCGACGGGAGACTGAATACATGAGGCTGCAGAGACGTAAAGTTGGAATTGATGACTTTGAGCAGTTAACTGTGATTGGTAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAAGTACAGGAGAGATTTATGCCATGAAGAAATTGAAGAAATCAGAGATGCTTAGCCGAGGACAGGTGGAACATGTTCGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGTCGATGCATTGTAAAACTTCATTACTCATTTCAAGATTCAGATTTCCTGTATCTCATCATGGAATATTTACCTGGTGGTGACATTATGACATTATTAATGAGAGAAGATATTCTTTCTGAAGATGTTGCCCGCTTCTACATTGCTGAAAGCATCTTAGCTATCCACTCAATACATCAACACAAATACGTTCATAGGGATATAAAACCAGATAATCTGATACTGGATAAAAATGGCCATTTGAAGCTTTCAGACTTCGGCCTATGTAAGCCTCTTGATGATAAGTATTCAACAATTTTGTTGGAAAGTGAAGATTTTACCAGTCATGAATCAACTAGTGGGGCTGAAGGATATTCTGCATCCCCTTGGTTAATGCCAAAGGAGAAATTACAACAGTGGAAACGTAATCGCCGAGCATTGGCATACTCAACTGTTGGAACTCTTGATTATATGGCGCCAGAAGTTTTGCTCAAAAAGGGCTACGGAATGGAATGTGATTGGTGGTCTCTTGGGGCAATCATGTACGAGATGCTTATTGGGTATCCTCCCTTTTGTTCTGACGATCCGAGGATGACATGCCGTAAGATAATTAACTGGAAAACATGCCTGAAATTCCCTGGAGAACCCAAGATATCAGCTGAAGCTAAAGATCTGATCTGTCACTTACTTTGTGATGTGGACACAAGACTCGGAACCAGAGGAGTTGAAGAAATAAAGGCTCATCCATGGTTCAGATCTATTCAGTGGGATATGCTTTATGAAATGGAGGCAGCACATAAACCTACTGTCATTGGAGACTCGGACACACAAAACTTTGAGAAGTTTCCCGAAGTAGAAGGACCACAATCCACAATAGCAACTGTGGGACCTTGGCGGAAGATGTTAACATCCAAAGACACCAATTTCATAGGATATACTTTCAAGAAATCAGACATCCTTAAATCACTTGAAAGTTCAGGCACAGATGTCAGATTGAATGGATCATCACAATCCCCTTCCATAATTTCCTTGTTAGGTCGGATTGACTTGCAAGACAGTGTCATTCCAGAAAGTGAGCAGAAGCCAGAACCTTCCTTGCTTTGA 1575 0.4216 MDGYDGTVRPGALRSNYDRSELDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKERRRALERKAQEAQVSVEEQEEMMRNLERRETEYMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKSTGEIYAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHKYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLESEDFTSHESTSGAEGYSASPWLMPKEKLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLIGYPPFCSDDPRMTCRKIINWKTCLKFPGEPKISAEAKDLICHLLCDVDTRLGTRGVEEIKAHPWFRSIQWDMLYEMEAAHKPTVIGDSDTQNFEKFPEVEGPQSTIATVGPWRKMLTSKDTNFIGYTFKKSDILKSLESSGTDVRLNGSSQSPSIISLLGRIDLQDSVIPESEQKPEPSLL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1878 524 SMART pkinase_C_6 409 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi08g1878 524 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Glsi08g1878 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 458 - -
Glsi08g1878 524 Pfam Protein kinase C terminal domain 429 471 IPR017892 GO:0004674|GO:0005524|GO:0006468
Glsi08g1878 524 CDD MobB_NDR_LATS-like 42 103 - -
Glsi08g1878 524 Gene3D Phosphorylase Kinase; domain 1 99 193 - -
Glsi08g1878 524 MobiDBLite consensus disorder prediction 1 36 - -
Glsi08g1878 524 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1878 524 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Glsi08g1878 524 FunFam Non-specific serine/threonine protein kinase 307 426 - -
Glsi08g1878 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Glsi08g1878 524 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Glsi08g1878 524 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1878 524 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1878 524 CDD STKc_NDR_like 106 472 - -
Glsi08g1878 524 SUPERFAMILY Protein kinase-like (PK-like) 83 460 IPR011009 -
Glsi08g1878 524 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Glsi08g1878 524 Gene3D Transferase(Phosphotransferase) domain 1 194 425 - -
Glsi08g1878 524 Coils Coil 57 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1878 Glsi-ChrGlsi08 13302021 13308536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1878 1 509 AGC Kinase Gene Family AT5G09890 78.516 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Glsi08g1878 Pkinase 1.8e-64 CL0016