Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1877 ATGTCATTATGCTCAGAAACAAATGCCCGAGAAAGAGGAGTCAACTGTTTAAACTCCCAACCCAAGATTGTGAACGTAGGTGCTGTCATTGACTTCAGTTCACGCCTGGGTAAGCAGCAAAAGATGGCTATGGAAATTGCAATCCAAGATGTAAATCGTTTCAGTTCTTCTAAACTTACTTTGAAGTTCAATAATTCTGGTGGAAACCCAGCTCAGGCTGTCACTGCTGTTGTACATCTTGCAAACAGCAGAGAAGTGGAAGCTGTGATAGGAACACAACTTAATGAAGCAAGTTTGGTCCCTAAGATTGATAAAACCTCAAAGAACCTACCTATCATATCCTTAACTTCAACTGCCAGCCCAGAATTGGCACTGTTTCGGTTGCCATACTTCATCCAGGTGGCTAATGATATTTCCTCTCACTTGCACTGCATTGCAGCCATCGTTGGGCAATTCAGGCGGCGAAAGGTGACTGCAATTTACCAACATAACGATGGCCTTTCCTCTTATTCGGAGACATTATCTGACCTGTCAGATTCTCTTCGGCTTGTTAATTCCGTTATTGATGAACATGTAGCTTTCCCCTCTTTGACTTCCCTTCTTGACTTGGAAGCCACCATAGAAGAGGAGCTCAAGAAGCTCAAGAACGGGAGCAATAGGGTGTTCCTGATTATACAGTCTACTTTAGAGTTTGCCATTCTGCTTTTTCAGAAAGCTAACCAAATGGGAATTATGCAGAAAGGCTCAGTGTGGATCATCCCAGATGATATAGCTGGCCATCTTGATTCTGTCGATCCCTCAGTTTACTTGAACATGCAGGGAGTTGTTGGATGCAAAAGCAACTTCGTGAACATAAGCGACAAGTTCAGACAGTTCAAGTTCAAATTCCAGAGGAAGTTTGGATTGAAATACCCCACAGATAAAAACCCACAGCCAAGTATCTTTGCACTTCGAGCTTATGATACCATTTGGGCTATGTCTAATGCCGTAATGAAATCAAAAGGAAACTGTTCCCCTAAAGAATTATCCGAAAATATCTTATCCAGTAATTTTGAGGGCCTTAGTGGCAGGATAAGCTTCAGAAATCGAAAATTGCAAGAATTACCGACCTTTAAGATAGTTAATGTCTCGGGAAAAAATTATGAAGAGGTAGCGTACTGGTCACCAGTATTTGGCTTGTCCGAGAACCACGCGAAGCATGAAGTATCGGAGACTAAAAGACGTTTTATTAGTTCTGCTGAAGTTCTAGCAAGTCGAAAGGAATGGATTTATGGTAATAAGGAAAAGCCTCTAAAGATAGGGGTTCCTGCTGAGGGTGCCTGTTCTCAGTTAATGAGTGTGACGTACGATCAGAGCCGGAATGTAACCCGAGTCAACGGTTTCTCTATTGATGTCTTTAACGCAGCTGTGGGGCACCTGCCTTATCATTTGCAGTTTGATTTTGTTCCCTTTTATGGCTCCTATGAAAAATTGCTTGAGCAAGTCGACAACAAGGTTCTCCATGGTGCTGTAGGAGATATCGAAATAATGGCTCAACGATATCGCTATGTGCAATTTTCACATCCATACGTGGATTCCAGCATTGCTATGGTAGTGAGAGCAAAACCAGATAGATCCAAAGAAACATGGATGTTCATGAAGGCCTTCACAAAAGAAATGTGGCTGTTAATGGCAACAATGCACCTGTTCATAACGTTTGTCATCTGGATCATCGAAGGGGAACAGAATTCAGAATTGAAGGGATTCGGGGCCATGCTTTGGTTCTCTGTCACCATATTATTCTTTGCACATAGAGAACCCGTGAAAAGCAACTTGGCCCGACTTGTTCTGGCTCCTTGGTTATTTGTGATTCTGATCGTATCGTCAAGTTTCACGGCAAGCCTGACCTCTATGATAACAGTCTCCCAACTTGAACCATCTGTGACAGATATACAGACACTTCAGAGGACGAATGCAATTGTAGGATGCAATAAGAGATCTTTTATGGTCAATTATTTGATTGATGAGCTCGGATTTAAGCCTCACAACATCAGGACATTTGATTCTATTACTGATTACCCAATAGCCTTTCAGAACAAAGAAATTGCTGCTGCTTTCTTAATTGCTCCTCAAGCTGAACTCTTCCTTGCTACAAATTGTAAAGGCTACACCCAAGCACGACCCACCTGGAAGCTCGGTGGTTTAGCCTTTGCATTCCCAAAAGGTTCAACTTTGGTAATAGACATATCAGAGGCAATCCTAAAGGCGATAGAATCTCGACAAGTCGAAGAAATAAAGGAAAATATGCTATCCAGCACTAGTTGCGGCACTTCAAACGCCGAGATACAAGAAGAACAATTAGGTCCTCTGCCCTTCTTTGGTCTGTTCTTTATTTCTGGCACCATTGCTATCTTTGGTTTGCTAATCACTTTCATGCAGTTAGTGGGAAAGAAAGTATACAAACTGACAGCCTTGCCACAGCTTTATATGCTTCATACCATATATGCATATTGCCCTGTAGGTCGTCTCTGTGTTATTTTCACCAACACTGCCAGATCTCTCGTGGCAATCCTCTGA 2556 0.4229 MSLCSETNARERGVNCLNSQPKIVNVGAVIDFSSRLGKQQKMAMEIAIQDVNRFSSSKLTLKFNNSGGNPAQAVTAVVHLANSREVEAVIGTQLNEASLVPKIDKTSKNLPIISLTSTASPELALFRLPYFIQVANDISSHLHCIAAIVGQFRRRKVTAIYQHNDGLSSYSETLSDLSDSLRLVNSVIDEHVAFPSLTSLLDLEATIEEELKKLKNGSNRVFLIIQSTLEFAILLFQKANQMGIMQKGSVWIIPDDIAGHLDSVDPSVYLNMQGVVGCKSNFVNISDKFRQFKFKFQRKFGLKYPTDKNPQPSIFALRAYDTIWAMSNAVMKSKGNCSPKELSENILSSNFEGLSGRISFRNRKLQELPTFKIVNVSGKNYEEVAYWSPVFGLSENHAKHEVSETKRRFISSAEVLASRKEWIYGNKEKPLKIGVPAEGACSQLMSVTYDQSRNVTRVNGFSIDVFNAAVGHLPYHLQFDFVPFYGSYEKLLEQVDNKVLHGAVGDIEIMAQRYRYVQFSHPYVDSSIAMVVRAKPDRSKETWMFMKAFTKEMWLLMATMHLFITFVIWIIEGEQNSELKGFGAMLWFSVTILFFAHREPVKSNLARLVLAPWLFVILIVSSSFTASLTSMITVSQLEPSVTDIQTLQRTNAIVGCNKRSFMVNYLIDELGFKPHNIRTFDSITDYPIAFQNKEIAAAFLIAPQAELFLATNCKGYTQARPTWKLGGLAFAFPKGSTLVIDISEAILKAIESRQVEEIKENMLSSTSCGTSNAEIQEEQLGPLPFFGLFFISGTIAIFGLLITFMQLVGKKVYKLTALPQLYMLHTIYAYCPVGRLCVIFTNTARSLVAIL 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1877 851 CDD GluR_Plant 429 763 - -
Glsi08g1877 851 Gene3D - 402 540 - -
Glsi08g1877 851 Pfam Bacterial extracellular solute-binding proteins, family 3 457 760 IPR001638 -
Glsi08g1877 851 SUPERFAMILY Periplasmic binding protein-like I 20 388 IPR028082 -
Glsi08g1877 851 CDD PBP1_GABAb_receptor_plant 25 396 IPR044440 -
Glsi08g1877 851 SMART GluR_14 432 765 IPR001320 GO:0015276|GO:0016020
Glsi08g1877 851 PIRSF IGluLR_plant 2 822 IPR017103 -
Glsi08g1877 851 Gene3D - 137 388 - -
Glsi08g1877 851 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 24 807 IPR015683 -
Glsi08g1877 851 FunFam Glutamate receptor 542 675 - -
Glsi08g1877 851 Coils Coil 200 220 - -
Glsi08g1877 851 Gene3D - 541 669 - -
Glsi08g1877 851 Gene3D - 36 369 - -
Glsi08g1877 851 Pfam Receptor family ligand binding region 40 378 IPR001828 -
Glsi08g1877 851 SUPERFAMILY Periplasmic binding protein-like II 426 760 - -
Glsi08g1877 851 Pfam Ligand-gated ion channel 761 792 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1877 Glsi-ChrGlsi08 13296064 13301948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1877 75 802 Ion Channels AT5G11210 31.274 4.38e-109 352