Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1870 ATGGACACCGGTGACCAGATGGACATGATGATGACGATGATGCAACTTCCTGAATTCTCTGGATCTTACACCTACGATGACGTGCCACCACCGGAGTTCTGTGGCGCAACCAACACCGTCACCGTCTCACATTTAACTGATAAACCTCAGGTGGCATTCACAAACTTACCATCTACTACGATCTCTTTCCTGAATCCTACTCCTGTGCTTGAGGAGCTAGCCCCACGAGCAGGAGAATGGGGTAGAGCATCAGAGAAAGCGGAGTCGATGGCGGCGATGAGGGAGATGATATTCAGGATAGCAGCCATGCAGCCAATACACATAGACCCAGAGTCGGTGAAGGCGCCCAAGAGGAGGAACGTGAAGATATCCAAGGATCCACAGAGCGTGGCTGCACGGCATCGCAGAGAAAGAATAAGTGAGAGAATAAGGATACTGCAAAGGTTGGTGCCGGGTGGGACTAAAATGGACACTGCCTCCATGCTAGACGAAGCCATTCGCTACGTCAAATTCCTCAAGACCCAGGTTCAGTCACTGGAACGTGCCGCCACTAACAGGCCACCCGGCTTAGGATATCTTCCTCTCCAAAAACCTTACCATTACGGTTATGGAGGAGATGCATAA 624 0.5096 MDTGDQMDMMMTMMQLPEFSGSYTYDDVPPPEFCGATNTVTVSHLTDKPQVAFTNLPSTTISFLNPTPVLEELAPRAGEWGRASEKAESMAAMREMIFRIAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKTQVQSLERAATNRPPGLGYLPLQKPYHYGYGGDA 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1870 207 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 55 185 IPR045843 GO:0003700|GO:0006355
Glsi08g1870 207 Coils Coil 162 182 - -
Glsi08g1870 207 SMART finulus 129 178 IPR011598 GO:0046983
Glsi08g1870 207 FunFam BHLH transcription factor 126 188 - -
Glsi08g1870 207 Pfam Helix-loop-helix DNA-binding domain 132 172 IPR011598 GO:0046983
Glsi08g1870 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 183 IPR036638 GO:0046983
Glsi08g1870 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Glsi08g1870 207 Gene3D - 122 186 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1870 Glsi-ChrGlsi08 13250774 13251397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1870 81 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 81.818 1.69e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi08g1870 HLH 8e-07 No_clan