Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1869 ATGGCTCTTCTGCTAGACAATTGTGAGGGCATTTTACTTTCTCTGGACTCTCACAAGTCGGTGCCCGCACCTTTCCTCACCAAGACGTACCAACTCGTAGATGATCCCACCACCGATCATATAGTCTCTTGGGGTGAAGACGACACCACCTTCGTGGTTTGGCGTCCGCCGGAGTTCGCCAGGGATCTCCTCCCCAACTATTTCAAGCACAATAACTTCTCTAGCTTCGTTCGCCAGCTCAATACCTATGGTTTTAGAAAGATTGTGCCGGACAGATGGGAGTTTGCGAACGAATTCTTCAAGAAGGGAGAGAAGCACTTGCTGTGCGAGATCCACAGAAGAAAAAGTGCTCAGCCTCATCAGGTTGCCATGAATCATGCCCATAATCCACTGGGACTCAACGTCCCCTCTTTCTTTCCCTTCCCCAGCAGACTCAGCATCTCCCCACCCAATGACTCCGACGACCAACCCAACTGGTGTGACTCGCCCCCACTCACTTCTCCAAGAGCAGGTGCCGCCGTGTCTTCAGTCATTAGTGGAGCCAACTACAACAGTTCCGTCACTGCGCTCTCCGAGGACAATGAAAGGCTCAGGCGAAGCAACAATATGCTCATGTCTGAGCTCGCACACATGAAGAAGCTCTATAACGACATCATTTACTTCGTTCAGAACCATGTCAAGCCAGTCGCACCAAGCAATTCTTACCCTTCTTCTTTGCTACTCTGCAATACACCACACGCATCCTCTCCTTTAGCTACTACTAACCTTTCAATGAACCACCAGCTTCTGGGCTATTATTCCACTAACCCTAAGCAACCTCCCCAACCCCATGTTTTGAACTCCCCTACTAACACATCAAAGACCTCCATAACCATTGTTGAAGAGCCCAGTAGCAACACCTGCAAGACCAAGCTTTTTGGTGTATCGCTTCAGTCCAAGAAAAGGGTGCATCCTGAGTATGCTTCTAATCCCACGAATTCGGAGACCAACAAGGCTCGTTTGGTCTTGGACGAGGATGACTTGGGCTTGAATCTCATGCCTCCTTCCACTTGTTAG 1056 0.4962 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKSAQPHQVAMNHAHNPLGLNVPSFFPFPSRLSISPPNDSDDQPNWCDSPPLTSPRAGAAVSSVISGANYNSSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYPSSLLLCNTPHASSPLATTNLSMNHQLLGYYSTNPKQPPQPHVLNSPTNTSKTSITIVEEPSSNTCKTKLFGVSLQSKKRVHPEYASNPTNSETNKARLVLDEDDLGLNLMPPSTC 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1869 351 Gene3D - 17 115 IPR036388 -
Glsi08g1869 351 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi08g1869 351 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi08g1869 351 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi08g1869 351 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi08g1869 351 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi08g1869 351 FunFam Heat stress transcription factor B-4 17 115 - -
Glsi08g1869 351 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 269 IPR027725 -
Glsi08g1869 351 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi08g1869 351 Coils Coil 187 207 - -
Glsi08g1869 351 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1869 Glsi-ChrGlsi08 13240776 13241916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1869 1 350 HSF AT1G46264 56.800 3.80e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi08g1869 HSF_DNA-bind 3e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0348 10 2275667 2276826 Glsi08g1869 08 13240776 13241916 CCT
Glsi08g1869 08 13240776 13241916 Glsi08g1869 08 13240776 13241916 ECH