Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1865 ATGACTAACTACGCGTTTCTGAACGATCAGCTCTCAAAGCACACCTCAATATTTGGCTTACGCCTGTGGGTAGTCCTGGGTATATGCGTAGGAGCAGCCATAGTCCTTGTATTATTTCTCATTTCACTCTGGTTCACTTCCAGGCGCACCAATTCTTCCAAGCTCAACTCTTCACAGAACCCCACAATCCCAAATGTCTCCAAGGAGATCCAGGAAATCCGGATTGACCATTCTCGAGAGCCAACCCATCCAAGGTCTGACACAAAGTCCAACCCCGACACACTTCCGGAAGCAGAGGGACTGGATAGGGCCCAAGCCATGCTTCTTCAGCAGGAGGATGAAAGCCCAGGAACGGGGCGCCACAGAATTCATATTGAAATTGGTAAGGATCACCGGATTTCGTATCCTGACAGGGGCGGTGGTTCATCGCATGGCAGCGGGGAGGCTCGTTCGGGTGAGCAGGCTTTAATTGCCGTGCCGGAGGTTTCCCACTTGGGTTGGGGGCATTGGTACACTCTTAGAGAGCTTGAGGTCTCTACCAATGGATTTGCTGATGAGAATGTCATAGGTGAAGGTGGCTACGGAATTGTTTACCGCGGTGTGTTGGAAGATGATACCAAGGTTGCAGTTAAGAATTTGCTCAATAACAGGGGACAAGCTGAGAGGGAATTCAAGGTAGAAGTTGAAGCAATTGGACGTGTTCGGCACAAGAATTTGGTGAGGTTACTTGGATATTGCGTTGAAGGAGCCCATAGGATGCTTGTTTACGAGTTTGTTGACAATGGAAACCTAGAACAATGGCTTCACGGAGATGTTGGGCCTTCTAGCCCTCTTACCTGGGAGATTCGCATCAATATAATACTTGGAACTGCAAAAGGGTTGACATACCTTCATGAGGGCCTTGAGCCCAAGGTTGTTCATCGTGACATCAAGTCAAGCAACATATTGCTTGACAAGCAATGGAACCCAAAAGTTTCTGATTTTGGCCTTGCAAAGCTCTTGGGAGCAGAGAGAACTTATGTGACAACACGTGTGATGGGCACATTTGGTTATGTGGCTCCAGAATATGCAAGCACTGGCATGTTAAATGAAAGAAGTGATGTGTATAGCTTTGGGGTTCTTCTTATGGAGATCATTTCTGGGAGAAACCCAGTAGATTATAGCCGTCCTCCTGGAGAGGTGAACCTGGTTGAGTGGTTGAAGACAATGGTTACTAACCGAAATGCAGAAGGAGTGCTTGATCCTAGGCTACCTGAGAAGCCTTCTTCTAGGGCATTGAAGCGTGCCTTGTTAGTAGCTTTAAGGTGTGTGGATCCAAATGCCCAGAAAAGGCCAAAGATGGGGCATGTTATACACATGCTTGAAGCTGAAGAGTTCCCTTTTCGAGATGACCGTAGAATTGGGAGGGAAAATGGACGCCCCCAGCGGGACAACACAAGAGATAGGTTGATTGAGAAGCGAGTAGGTGAATCAGGTGACAGTAGTGGTTATGAAAGTAGTGTCCAAACTAATAGGTCTTTGTGGAGAAATCAAGAAACTGAAGACCCGTAG 1551 0.4745 MTNYAFLNDQLSKHTSIFGLRLWVVLGICVGAAIVLVLFLISLWFTSRRTNSSKLNSSQNPTIPNVSKEIQEIRIDHSREPTHPRSDTKSNPDTLPEAEGLDRAQAMLLQQEDESPGTGRHRIHIEIGKDHRISYPDRGGGSSHGSGEARSGEQALIAVPEVSHLGWGHWYTLRELEVSTNGFADENVIGEGGYGIVYRGVLEDDTKVAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAHRMLVYEFVDNGNLEQWLHGDVGPSSPLTWEIRINIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGAERTYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGVLLMEIISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLPEKPSSRALKRALLVALRCVDPNAQKRPKMGHVIHMLEAEEFPFRDDRRIGRENGRPQRDNTRDRLIEKRVGESGDSSGYESSVQTNRSLWRNQETEDP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1865 516 Gene3D Phosphorylase Kinase; domain 1 156 258 - -
Glsi08g1865 516 SMART serkin_6 183 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1865 516 SUPERFAMILY Protein kinase-like (PK-like) 164 455 IPR011009 -
Glsi08g1865 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Glsi08g1865 516 MobiDBLite consensus disorder prediction 465 492 - -
Glsi08g1865 516 FunFam Putative receptor-like serine/threonine-protein kinase 259 469 - -
Glsi08g1865 516 ProSitePatterns Protein kinases ATP-binding region signature. 189 211 IPR017441 GO:0005524
Glsi08g1865 516 MobiDBLite consensus disorder prediction 76 97 - -
Glsi08g1865 516 MobiDBLite consensus disorder prediction 76 92 - -
Glsi08g1865 516 MobiDBLite consensus disorder prediction 125 150 - -
Glsi08g1865 516 Pfam Protein tyrosine and serine/threonine kinase 187 454 IPR001245 GO:0004672|GO:0006468
Glsi08g1865 516 FunFam Probable serine/threonine-protein kinase At1g01540 163 258 - -
Glsi08g1865 516 ProSiteProfiles Protein kinase domain profile. 183 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1865 516 PANTHER OS01G0323000 PROTEIN 3 477 - -
Glsi08g1865 516 CDD STKc_IRAK 189 455 - -
Glsi08g1865 516 MobiDBLite consensus disorder prediction 493 509 - -
Glsi08g1865 516 Gene3D Transferase(Phosphotransferase) domain 1 259 466 - -
Glsi08g1865 516 MobiDBLite consensus disorder prediction 465 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1865 Glsi-ChrGlsi08 13205221 13207989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1865 138 505 Trihelix Transcription Factor Family AT1G70460 43.570 2.26e-91 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Glsi08g1865 PK_Tyr_Ser-Thr 3.6e-46 CL0016