Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1864 ATGCAAGGGCAGAGGAGTACAATTAGTTCCTTGCCTGAAACCTTAGAATTTGATTGTGGATCTACATCAAGTAGTGCTACTGTGGATCAGCAGATTTGCTGGGATAGCACGAGGAATTCTGCAGAAAATCTATCACCTGGTTATATACTTTCACCTGGTGATATGAACCCATTGTATGTAAATTCTATAAACCATGAATGGAAGAATTTGAGTGGTTGGAGCGTAGGCGAGCCAAGTTCTGGTGGTACACAAATTGAGATTAACAATAATGAGCAGAAAAGGGAACTCGGATGGTCTTCTTCATTAAGTGCTGGTGCTGTAGCTGGTCCAAGATTAGAACAGAACTTTGAACCAACTAATAATGTTTCATTGGATAATGTCAATACAAGTCCTATGTATATGGGCTGCTCCAATACTCATGCCGTGTCACAGAATCTCAACTTAAATGCAGGTTTGGCAGACGGTGGCAATGATACTAGTCAACACCTGGAGCATCCTAGCTTGCACAAATCTAGTGGATCAGGAAATGAGCCTATTTTACCCACTATTGGTTCTGCCCCCTTTATTCTTCCTTCTGGAAATAACAGCTTCTTGGTAGATGATACTAATGGTAGGCCAGGTTGTTCTCTTGATGCTCGCCGTGTATCTTGTAAAAGAAAGGCTGTTGAAGGATATGTTGGACAATCTTCAGGTGGTGGAAGTTCTAGCTACAGTCAGCATACAGAAAGTAGTGCTTGGCACTCTCTTCCTACTCAGAATAATGCACGGAGCAATATAAGCAGATCTGCTTCATCAGAACATGTAAGTTCAAGACTTGGTCTGGGTATGAGGAATGAATCCTCTGAGAGCGTTCATGATTTGAATGTTGCAGGAAGCTCAAATAGCTTTCAGAGGAATTTCCGCTTGAGGATAAATCCTTCAAACCAACAAGATTCTGTACCACCCCCTGCATTCTCAACTGGGAGCGTGATTAGGCATCCTACTGTTTCTTCATCGTCTCCAATGTCACAGATGTTTCATCCTGTGGATAATTCTCTGGACTTGAGGTCAGCCCCGTCAACTGATAATATGGTTCCTCAAAACCAGCCTCCTGCAATTAATGTTCCTTCTTTAACCAGGAATTTGCAATCATTTAGATGGAGTGGCAGTTCTAGCTCAAGAAATAGCCATTTGCCAAACTCAATTGTTTGTTCAGACAGGGATAATCTACAACATGAAGAAGCAAGCTTAAGAAGTATGTCGAGAAACATATTAGAACACCCAATGTTTGTGCCTGCAACTGATTTAAGAAATTCAGTTCGGAATCCAACAATTAGAGCTTCAAGTAGTGCTAATTCAAGTACACCAGGAAATGTTGTGTCCTCATCGCCTACTGTATCAAATTCAGCCATCAATCCCCCGTCTGCCCCATCCTGGGTTTCTCGTCCAAATCCTCCACAATATCCACGGAGGTTATCTGAATATGTTCGTCGGTCATTGTTTTCTCCTGGTTCTGAGGCTGCTGGAGGTTCGAGCAACAACTTTCCTTCATTGCGCTCTGGTCCTATTGCTTCATTTGAGGCAAGGGCACTATCATCTCGGTCTGGTAACCAGGGACGTCATCAGTCACACTCGAGATCATCTTCATCTTGGGAGAGGCAAGGTGATAGTGACTTTAGAGTTCCCTATTCATTACAAACTTTGGCCGTTGCCAGTGAAGGAAATACTAGACTTCTATCTGAGCTCCGCAATGTTTTGGGCCTCATGCGTAGGGGTGGGAGCCTTCGATTTGAGGATGTTATGATCTTTGACCAATCGGTTTTTTCTGGAATGGCTGATATTCATGATCGGCACAGGGATATGCGACTAGATGTTGATAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAGCGTATTGGAAATGTGAGTACCGGATTGAGTGAGGAAACTATATTGAAACTACTGAAACAGAAGAAGTATTCAGTTGAACAAGAAACTCAGCTTGAGGCAGAACCCTGCTGTGTTTGTCAGGAAGAGTATATCAACGGAGATGATATTGGAACGCTTGATTGTGGCCATGATTACCATACCAACTGTATCAAAAAGTGGCTAATGCATAAGAATGTGTGTCCCATTTGTAAGACAGCGGGCTTGGCAACATGA 2145 0.4289 MQGQRSTISSLPETLEFDCGSTSSSATVDQQICWDSTRNSAENLSPGYILSPGDMNPLYVNSINHEWKNLSGWSVGEPSSGGTQIEINNNEQKRELGWSSSLSAGAVAGPRLEQNFEPTNNVSLDNVNTSPMYMGCSNTHAVSQNLNLNAGLADGGNDTSQHLEHPSLHKSSGSGNEPILPTIGSAPFILPSGNNSFLVDDTNGRPGCSLDARRVSCKRKAVEGYVGQSSGGGSSSYSQHTESSAWHSLPTQNNARSNISRSASSEHVSSRLGLGMRNESSESVHDLNVAGSSNSFQRNFRLRINPSNQQDSVPPPAFSTGSVIRHPTVSSSSPMSQMFHPVDNSLDLRSAPSTDNMVPQNQPPAINVPSLTRNLQSFRWSGSSSSRNSHLPNSIVCSDRDNLQHEEASLRSMSRNILEHPMFVPATDLRNSVRNPTIRASSSANSSTPGNVVSSSPTVSNSAINPPSAPSWVSRPNPPQYPRRLSEYVRRSLFSPGSEAAGGSSNNFPSLRSGPIASFEARALSSRSGNQGRHQSHSRSSSSWERQGDSDFRVPYSLQTLAVASEGNTRLLSELRNVLGLMRRGGSLRFEDVMIFDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKQKKYSVEQETQLEAEPCCVCQEEYINGDDIGTLDCGHDYHTNCIKKWLMHKNVCPICKTAGLAT 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1864 714 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 155 712 IPR045191 GO:0061630
Glsi08g1864 714 MobiDBLite consensus disorder prediction 436 470 - -
Glsi08g1864 714 FunFam E3 ubiquitin-protein ligase MBR2 635 712 - -
Glsi08g1864 714 Pfam Ring finger domain 667 708 IPR001841 -
Glsi08g1864 714 SUPERFAMILY RING/U-box 652 709 - -
Glsi08g1864 714 MobiDBLite consensus disorder prediction 306 338 - -
Glsi08g1864 714 ProSiteProfiles Zinc finger RING-type profile. 667 708 IPR001841 -
Glsi08g1864 714 MobiDBLite consensus disorder prediction 151 179 - -
Glsi08g1864 714 MobiDBLite consensus disorder prediction 151 184 - -
Glsi08g1864 714 MobiDBLite consensus disorder prediction 224 272 - -
Glsi08g1864 714 MobiDBLite consensus disorder prediction 436 478 - -
Glsi08g1864 714 MobiDBLite consensus disorder prediction 523 548 - -
Glsi08g1864 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 711 IPR013083 -
Glsi08g1864 714 SMART ring_2 667 707 IPR001841 -
Glsi08g1864 714 MobiDBLite consensus disorder prediction 228 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1864 Glsi-ChrGlsi08 13197832 13203259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1864 216 714 C3H Transcription Factor Family AT2G15530 38.846 4.27e-85 281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0354 10 2309928 2313897 Glsi08g1864 08 13197832 13203259 CCT
Glsi08g1864 08 13197832 13203259 Glsi08g1864 08 13197832 13203259 ECH