Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1863 ATGGGAGAGCCTCGTTGCTCCAATGCGACTTCGCCTGCCTCACTCCCTCCCGGTTGCCGTTTTTACCCTTCCGAAGAGCAGCTGCTCTGCTACTATTTAACCCACAAGAACTCCAGTGGGAACAAGGATGATAATTTCTATGGAAGCGATTTGATCCGAGAGCTTGATCTGTACGATCATGACCCTTTTCAATTGCCGGACATTGCGTGCTTTTCCTATGGTTATCGGGGAAGGAAGAGGCATTGGTACTGTTATACTGTCAGGGTTTTGAAGGAGACCAGGCGGAAGATTAGGAATGTCAAGAGCGGGTATTGGATGAGACAGGGAAGGGTTAGGGATGTTTTGAGTGGTGGTAGCAATGTGGTCTTGGGCACGAGGACCAGTTTCGTTTTCTATTTGGGGAATTCCCCGAAGAACGCTAGCAGGACGAATTGGATTTTGTATGAATATGCATTAGTCGATCATCTTAAGGCTTCTTTTGTAGTTTGTCGTGTATTTGTTAAACCCCGTCATGGGAATAGTGCATCAGAGGTTGGTCTGAGTTCTTGTGCAGAAGAAAGTTTCTCAGCAGTACGCCACATTGGTATTCAGCACGATGGATTTATTACACCTGATACTATTGAGGCTAGAGCGTATGGTGACAGCTCTATTGACAGAAAGAATGAGATTTCAGTGTACCCACCGAGACATGCTAGTGAAGTAGATGAACATCAGGTTGCGGCTGCACCCGTGTCTGTTGCTACTTTCCAGTGTTCCGCAGGTCCCCAAGGCAGTCAACTGGGAAAGTTTTCTGGACTTCCTGGTGGTGGTGCAATATTTGTTGAAGCCGTGACACCTCAGCAACGTTTACTTTCCATTCTAGAGGAGGATTTCATAGAGTTGGATGATCTAGCATGA 897 0.4671 MGEPRCSNATSPASLPPGCRFYPSEEQLLCYYLTHKNSSGNKDDNFYGSDLIRELDLYDHDPFQLPDIACFSYGYRGRKRHWYCYTVRVLKETRRKIRNVKSGYWMRQGRVRDVLSGGSNVVLGTRTSFVFYLGNSPKNASRTNWILYEYALVDHLKASFVVCRVFVKPRHGNSASEVGLSSCAEESFSAVRHIGIQHDGFITPDTIEARAYGDSSIDRKNEISVYPPRHASEVDEHQVAAAPVSVATFQCSAGPQGSQLGKFSGLPGGGAIFVEAVTPQQRLLSILEEDFIELDDLA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1863 298 ProSiteProfiles NAC domain profile. 15 168 IPR003441 GO:0003677|GO:0006355
Glsi08g1863 298 SUPERFAMILY NAC domain 10 168 IPR036093 GO:0003677|GO:0006355
Glsi08g1863 298 Pfam No apical meristem (NAM) protein 16 152 IPR003441 GO:0003677|GO:0006355
Glsi08g1863 298 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Glsi08g1863 298 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1863 Glsi-ChrGlsi08 13190886 13193331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1863 14 186 NAC Transcription Factor Family AT4G27410 32.124 4.68e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi08g1863 NAM 1.3e-22 No_clan