Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1861 ATGGCGCAAATTCAGGTTCAACATCAAAGTCCCGTTCCTGCTTCCAATGCTGTGGCGTCGGCTCCGGCCTTGTACGTTGGGGATCTTGATCCCAGTGTGAATGACTCGCATCTCTACGATTTCTTCAATCAGGTTGGCCAGGTTGTTTCCGTTCGGGTCTGCAGGGACTTGACCACCCGTCGATCCCTCTGTTACGGTTATGTTAATTACAGTAACCCTCTGGATGCGGCAACAGCATTGGAAGTGCTGAATTTCACTCTGTTGAACAACAAACCTGTTAGGATAATGTACTCTCATCGAGATCCTAGTATTAGGAAGAGTGGTACTGCAAATATATTCATAAAGAATTTGGATAAGGCAATTGACCACAAGGCCCTACATGAGACCTTTTCTGCTTTTGGAAATATTCTTTCTTGCAAGATAGCAACTGATGCTTCTGGACAGTCAAAAGGCTACGGTTTTGTACAATTTGACAATGAGGGCTCTGCACAAAATGCAATCGACAAGTTAAATGGCATGCTGATAAATGATAAACAGGTCTATGTAGGACATTTCCTGCGAAAGCAGGACAGGGAAAGTGTTTTGAATAACACAAAATTTAATAATATCTATGTGAAAAACCTATCAGAGTCAATGACAGATGAAGACTTGAAGAAAATTTTTGGAGAATATGGGACTATTACTAGTGTTGTAGTAATGAGAGATGGGGATGGAATATCAAAATGTTTTGGTTTTGTCAACTTTGAAAATGCAGATGATGCTGCTAAAGCTGTTGAGGCACTTAATGGAAAGAAATTTGATGATAAAGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGAGAGAGCTTGTACTTAAAGGACGATTTGAGCAGAGTATTAAGGAATCTGTTGACAAATATCAAGGTGTTAACTTGTATCTTAAGAACTTGGATGATAGCATTGGTGATGAAAAACTTAGGGAACTGTTCTCTGAGTTTGGCACAATATCATCATGCAAGGTTATGTGTGACCCAAATGGGATCAGCAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCATCTCGAGCTCTTGCAGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTCTACGTTGCACTTGCACAGAGAAAAGAAGAGAGAAAAGCAAGGTTACAGGCACAATTTTCACAAATGAGGCCTGTTGCTTTGGCTTCTTCTGTTGCGCCTCGCATGCCAATGTATCCTCCTGGTGCTCCAGCTGTAGGACAGCAATTTTTGTATGGGCAAGCACCTCCAACCATTATTCCTCCTCAAGCTGGATTTGGTTACCAGCAGCAACTTGTTCCTGGGATGAGGCCTGCTGGTGCTCCAATGCCAAACTTTTTTGTCCCAATGGTTCAGCAGGGTCAGCAAGGCCAGCGCCCAGGCGGACGCCGAGGAGGTGCTGTGCAATATCCACAGCCGCCAATGCCACTGATGCAGCAACAGTTGCTTCCAAGGGGCCGTGTCTATCGTTACCCTCCGGGTCGCAACATGCAGGATGTTCCAATGCCAGGTGTAGCTGGAGGAATGCTTTCTTATGGCATGGGTGGTGTGCCAATCCGGGATGCAGTGGGACAGCCAATGCCTATTCAGGCTTTGGCAACAGCCCTTGCAAATGCTCCTCCTGAACAGCAGAGGGCTATGCTGGGTGAAGCTTTATACCCGCTGGTAGATCAGCTGGAGCAGGATGCAGCAGCTAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAAGTATTGCATCTGATCGAGTCACCTGATGATTTGAAAGAGAAAGTTGCTGAGGCCATGGATGTCTTGAGAAATGTTGCTCAGCAGCGAGCTAACAGCCCGGCCGAGCAGCTAGCCTCACTCACACTGAATGATAATCTAGTCTCTTAG 1920 0.4536 MAQIQVQHQSPVPASNAVASAPALYVGDLDPSVNDSHLYDFFNQVGQVVSVRVCRDLTTRRSLCYGYVNYSNPLDAATALEVLNFTLLNNKPVRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHETFSAFGNILSCKIATDASGQSKGYGFVQFDNEGSAQNAIDKLNGMLINDKQVYVGHFLRKQDRESVLNNTKFNNIYVKNLSESMTDEDLKKIFGEYGTITSVVVMRDGDGISKCFGFVNFENADDAAKAVEALNGKKFDDKEWYVGKAQKKSERELVLKGRFEQSIKESVDKYQGVNLYLKNLDDSIGDEKLRELFSEFGTISSCKVMCDPNGISRGSGFVAFSTPEEASRALAEMNGKMVAGKPLYVALAQRKEERKARLQAQFSQMRPVALASSVAPRMPMYPPGAPAVGQQFLYGQAPPTIIPPQAGFGYQQQLVPGMRPAGAPMPNFFVPMVQQGQQGQRPGGRRGGAVQYPQPPMPLMQQQLLPRGRVYRYPPGRNMQDVPMPGVAGGMLSYGMGGVPIRDAVGQPMPIQALATALANAPPEQQRAMLGEALYPLVDQLEQDAAAKVTGMLLEMDQPEVLHLIESPDDLKEKVAEAMDVLRNVAQQRANSPAEQLASLTLNDNLVS 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1861 639 FunFam Polyadenylate-binding protein 287 392 - -
Glsi08g1861 639 SMART rrm1_1 305 377 IPR000504 GO:0003723
Glsi08g1861 639 SMART rrm1_1 202 274 IPR000504 GO:0003723
Glsi08g1861 639 SMART rrm1_1 111 183 IPR000504 GO:0003723
Glsi08g1861 639 SMART rrm1_1 23 96 IPR000504 GO:0003723
Glsi08g1861 639 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 541 618 IPR002004 GO:0003723
Glsi08g1861 639 SMART rrm2_1 111 183 IPR003954 GO:0003676
Glsi08g1861 639 SMART rrm2_1 305 377 IPR003954 GO:0003676
Glsi08g1861 639 SMART rrm2_1 202 274 IPR003954 GO:0003676
Glsi08g1861 639 Gene3D - 289 393 IPR012677 -
Glsi08g1861 639 Gene3D - 191 288 IPR012677 -
Glsi08g1861 639 FunFam Polyadenylate-binding protein 111 184 - -
Glsi08g1861 639 SUPERFAMILY PABC (PABP) domain 485 631 IPR036053 GO:0003723
Glsi08g1861 639 Gene3D - 103 190 IPR012677 -
Glsi08g1861 639 FunFam Polyadenylate-binding protein 537 619 - -
Glsi08g1861 639 Pfam Poly-adenylate binding protein, unique domain 549 613 IPR002004 GO:0003723
Glsi08g1861 639 Gene3D - 4 102 IPR012677 -
Glsi08g1861 639 Gene3D - 537 620 - -
Glsi08g1861 639 CDD RRM4_I_PABPs 303 381 - -
Glsi08g1861 639 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 278 IPR000504 GO:0003723
Glsi08g1861 639 FunFam Polyadenylate-binding protein 191 286 - -
Glsi08g1861 639 SUPERFAMILY RNA-binding domain, RBD 201 385 IPR035979 GO:0003676
Glsi08g1861 639 SUPERFAMILY RNA-binding domain, RBD 24 191 IPR035979 GO:0003676
Glsi08g1861 639 CDD RRM2_I_PABPs 108 184 IPR045305 -
Glsi08g1861 639 PANTHER RNA BINDING PROTEIN 23 84 - -
Glsi08g1861 639 SMART poly_2 553 616 IPR002004 GO:0003723
Glsi08g1861 639 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 23 614 IPR006515 GO:0003723
Glsi08g1861 639 CDD RRM3_I_PABPs 200 279 - -
Glsi08g1861 639 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 93 IPR000504 GO:0003723
Glsi08g1861 639 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 180 IPR000504 GO:0003723
Glsi08g1861 639 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 374 IPR000504 GO:0003723
Glsi08g1861 639 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 271 IPR000504 GO:0003723
Glsi08g1861 639 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Glsi08g1861 639 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 381 IPR000504 GO:0003723
Glsi08g1861 639 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1861 Glsi-ChrGlsi08 13185823 13189619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1861 1 634 Eukaryotic Initiation Factors Gene Family AT4G34110 65.278 0.0 830