Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1860 ATGAAGGTGCACCAGTTCACACGTGGATTGTGGGAGCACGAAGCCTCCCTCGCGCTGGGCTGCAAGCGCTTACGCCCTCTTGCTCCCAAGCTCCACAACACCACCACCCACCCTAATTCTGATCTCAGGAGCTTCATCAGACCCGAAAGTGGCCCCAGAAAACTCCCATCCAAGAAAGATTCCCCCCTGGCGGTGGAAACGCACCCGGGAGGGACGCGGTGGAATCCGACGCAAGAACAGATTGGAATATTGGAGATGCTGTACAGAGGTGGGATGCGAACTCCAAATGCTCAACAGATAGAGCACATCACCGCGCAGCTTGCAAAGTACGGCAAGATCGAAGGCAAGAATGTGTTCTATTGGTTCCAAAACCACAAAGCGCGCGAAAGACAAAAGCAGAAACGCAACACCCTTGCTCTTCCCACTCCTACGCACATTCCCATTACGACTATAACTTTGGACACCCGGGGGGAAGATGTGGCGTTGAGGAAGAAGCGTAGGAGCTGGGCATTTGAGTGCTTTGAAGACGAAGAAAGCAAATGGTTATGTAAAGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTACACCCGGAACCTCAAACCCATCTGTCTGATCTTCTATTTGTTGATTACAGCTCGGTGCATGACTGAAAAGTGATTGAAAAAAGGAAGACCAACTCAGGGGAAGAGAAGGAAATCTGTGAGAGTGAGAGTGAGAAAATGGGAGGCAATAGAGGGGATCGAGAATCTTCAGAGGAACAAATAGCCTTGAAGGTTGAAAAAGGTGTGGAACACCGCCACCCAAGCTGTCGTGAAGCAGTTGAACCATCTGCAACACCACTGAGCTACAGAAGTTTCAGAGATAAGGAAGACCAGAAAGACTGA 888 0.5 MKVHQFTRGLWEHEASLALGCKRLRPLAPKLHNTTTHPNSDLRSFIRPESGPRKLPSKKDSPLAVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEHITAQLAKYGKIEGKNVFYWFQNHKARERQKQKRNTLALPTPTHIPITTITLDTRGEDVALRKKRRSWAFECFEDEESKWLCKEEEHRTLELFPLHPEPQTHLSDLLFVDYSSVHDXKVIEKRKTNSGEEKEICESESEKMGGNRGDRESSEEQIALKVEKGVEHRHPSCREAVEPSATPLSYRSFRDKEDQKD 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1860 295 MobiDBLite consensus disorder prediction 29 76 - -
Glsi08g1860 295 MobiDBLite consensus disorder prediction 223 273 - -
Glsi08g1860 295 Pfam Homeodomain 72 131 IPR001356 GO:0003677
Glsi08g1860 295 SUPERFAMILY Homeodomain-like 68 138 IPR009057 -
Glsi08g1860 295 MobiDBLite consensus disorder prediction 223 295 - -
Glsi08g1860 295 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 199 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Glsi08g1860 295 Gene3D - 71 139 - -
Glsi08g1860 295 ProSiteProfiles 'Homeobox' domain profile. 67 132 IPR001356 GO:0003677
Glsi08g1860 295 CDD homeodomain 72 133 IPR001356 GO:0003677
Glsi08g1860 295 SMART HOX_1 69 136 IPR001356 GO:0003677
Glsi08g1860 295 FunFam WUSCHEL-related homeobox 4 71 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1860 Glsi-ChrGlsi08 13182335 13184536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1860 1 138 Wox Gene Family AT1G46480 66.452 2.36e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Glsi08g1860 Homeodomain 1.5e-18 CL0123