Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1859 ATGGAGGAAAAAGAGTGTGGTTCAGGGAAGCCGAAGAGCAGAAGAACCCCAGAGAAGCGGAAGCAACGAGAAGCAACAGAGAAACCATATAGAGGGATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAGATCAGAGAACCCAACAAAAGGTCTAGGATTTGGTTGGGGTCTTACAGCAGTCCGGTGGCCGCCGCACGGGCATACGACACCGCCGTTTTCTATCTGAGAGGCCCCTCAGCTCGCCTTAACTTTCCGGAATTTTTATTGCAAGACGAAGAAGAGGATTTCATCCAAGGCCACCTGTCCGCTGATTCCATACGCAAAAAGGCCACCGAAGTCGGCGCCAGAGTTGACGCTCTCCAAACCGCTCCTCATGCCTCATGCACCGCTGACAAACCCGACTTGAATGAATATCCCAAATCCGAGGATTGCTGA 438 0.5228 MEEKECGSGKPKSRRTPEKRKQREATEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPEFLLQDEEEDFIQGHLSADSIRKKATEVGARVDALQTAPHASCTADKPDLNEYPKSEDC 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1859 145 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Glsi08g1859 145 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Glsi08g1859 145 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 144 - -
Glsi08g1859 145 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Glsi08g1859 145 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Glsi08g1859 145 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Glsi08g1859 145 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Glsi08g1859 145 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Glsi08g1859 145 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Glsi08g1859 145 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Glsi08g1859 145 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1859 Glsi-ChrGlsi08 13175653 13176090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1859 1 134 AP2-EREBP Transcription Factor Family AT1G46768 60.432 3.63e-49 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g1859 AP2 1.7e-11 CL0081