Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1857 ATGCGAGGAAGCCAGAGTATGAATCATCTCTCACTCTGCAATGCAATAGAACCCACTCCTCCTTCACTTTTCCTTCGCAATCGCAGGCCACAGAGCAGCATCCATTTCTGGCCGTCTTCCTCCCCCAATTTCAGAAACATAGTATTACTTGCGTTCTCATCAAAATCCCCACTTCTAGCTTTGCCTTCACGCCGATGGTTAACCAGAGCCTGCTCCGTCACAAGTTCCGACATCGACATGGTCAAGAACAAGGAAGGTGTTTATGCCCCCAAACAGAAAAAGGTTGTAGTCCTTTGGGACCTTGATAACAAACCTCCTCGCGGGCCGCCATATCAGGCTGCCATGGCTCTAAAACAGGTGGCACAGCGCTTCGGCGACGTTGTTGACATGTCTGCCTATGCCAATCGCCACGCATTTATCCATTTACCCCAATGGGTCCTCCAGGAACGCCGTGAGCGGAAGCAAATGGAAATTCTTGAGCGTAAAGGAATGGTCATGCCATCCGAGTCGTACATTTGTGGGGTTTGCGGCCGCAAGTGTAAGACTAATTTCGACCTCAAGAAGCATTTCAAGCAGCTCCATGAGCGAGAGCGTCAGAAGAAGCTGAATCGGATGAGGTCGCTTAAGGGGAAAAAGCGTCAGCGTTATAAAGAGAGATTCATATCTGGGAATCACAAGTACAGTGAGGCAGCGAGGTCCTTGATTACGCCTAAGGTGGGATATGGGCTCGCTTCGGAGTTAAGGCGTGCTGGAGTGTTCGTGAAGACGGTAGAGGATAAACCGCAAGCAGCGGATTGGGCACTGAAAAGGCAGATGCAACACTCAATGAGCAGAGGGGTAGATTGGTTGTTTTTGGTATCAGACGATTCAGATTTCTCGGATATGTTGAGGAGGGCGAGGGAGGCAAATTTGGGGACGGTGGTTGTGGGAGACTGGGATAGGGCATTAGGGCTGCATGCAGACTTATGGGTTCCTTGGATTGGAGTTGAGAATGGAGAGCTTAAGGAGACAGATTTGATGAAGAGGAGAAGAAGAGAGTCTTTTGCTAAAGATGACAGCTTCTTTTCAGTATCGCATTACGATGGAGATAATGTTGCTGTGAGCGATTTGGATGGGATTGTGGATGAGCTTGTAGCAATGAGAACCGAGTTTAATGATGTGAGAAATGCAACATATTCAGATGAGGACGAGGGACAAGGGTGGGTTTCAGACGAACGGAATGAAGACTATTTGTTATTGAGTAGTGAGGATGAGGACGAAGAAGAAGAAGAAGATGGATTTTATTGA 1287 0.481 MRGSQSMNHLSLCNAIEPTPPSLFLRNRRPQSSIHFWPSSSPNFRNIVLLAFSSKSPLLALPSRRWLTRACSVTSSDIDMVKNKEGVYAPKQKKVVVLWDLDNKPPRGPPYQAAMALKQVAQRFGDVVDMSAYANRHAFIHLPQWVLQERRERKQMEILERKGMVMPSESYICGVCGRKCKTNFDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKERFISGNHKYSEAARSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGVDWLFLVSDDSDFSDMLRRAREANLGTVVVGDWDRALGLHADLWVPWIGVENGELKETDLMKRRRRESFAKDDSFFSVSHYDGDNVAVSDLDGIVDELVAMRTEFNDVRNATYSDEDEGQGWVSDERNEDYLLLSSEDEDEEEEEDGFY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1857 428 CDD PIN_LabA-like 181 311 - -
Glsi08g1857 428 MobiDBLite consensus disorder prediction 391 428 - -
Glsi08g1857 428 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 67 363 - -
Glsi08g1857 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 199 IPR013087 -
Glsi08g1857 428 ProSitePatterns Zinc finger C2H2 type domain signature. 173 194 IPR013087 -
Glsi08g1857 428 Coils Coil 191 211 - -
Glsi08g1857 428 MobiDBLite consensus disorder prediction 411 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1857 Glsi-ChrGlsi08 13170586 13171872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1857 12 405 C2H2 Transcription Factor Family AT5G52010 61.692 3.07e-170 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi08g1857 None None None