Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1852 ATGCTTAGAAGCAATCATTTACCCCTTCCCCTTCATGTTCAACTCTTCTTGCTACTTCTCTCCTATTCATCTGTCTTCTTGTCACTTTCATCCACTGTTGCTCCTTCTAGGCCTGCCCTGAATCATCCTCAACCAGCATTTCACTCATTCTTACCTTCTGATGCTCTTGCCTTACTTGCATTCAAATCCAAAGCTGATCTCAACAATCACCTCCATTTCTCCCCAAACTCTTCCGCCGTCCCTTTTTGCCAATGGCAAGGTGTCCAATGCAATGCCCCCAAAAAAATAGTGCGTCTCGTTCTTCAGGGCTTAGATCTCGGGGGTGTTTTTGCTCCGGACACTTTGTCTCGTCTTGACCAGCTCCGCGTCCTCAGTTTGCAGAACAACTCTCTCACCGGACCCATACCCGATCTCTCCGCTCTTGTCAATCTCAAAAGCCTCTTCCTTGATAACAACTACTTCACGGGTTCTTTTCCTCCTTCTATCCTCTCCCTTCATAGGCTTCGAACACTGGATTTCTCCCACAACAATCTCTCTGGGCCCATTCCCTTCGGGTTAACCAAGCTAGACCGCTTCTACTACCTCCGTCTCAGTTGGAACAGATTCAACGGAACCATCCCTCCCCTGAATCAGTCTGCTTTACGAACCTTCGACGTCTCTGGTAATAACCTTACCGGTCCTATTCCTGTCACACCCACTTTGGTCCGTGTTGGGCCCTCCTCCTTCTCTTTAAACCCAGGCCTCTGTGGCGAAATAATCCACAAAGAATGCCACCCAATTGCCCCTTTCTTCAGACCAACGGCGCCAGTCGCGGTAGCGTCGCCGCCGACGATGGCGCTGGGGCAGAGCGCACGAGTCCACGGCGTTGATGGCTTAATCCGTCAACCGTACAAGAAAAAGCATAGTAGAACCGCAGTGATTATCGGGTTCGCCACAGGGGTTTGCGTCCTTATCGCTTCGCTTGTCTGTTTCGTGCTAGGCGTGAAGAAACAGAGAAACAAGGAGCATTTAACGAATATGATGGCTTCGGATGCAACGGCCACCGCGGAAGCAGCGGCCGTGATGCAAATCGAGCAAGAAAAGGAATTGGAGGAGAAGGTGAAGAGGGTGCAAGGGATGCAAGTGGCCAAGAGTGGGATTTTAATATTCTGTGCGGGGGAGGCTCAGCTATATACACTGGACCAGTTGATGAGAGCCTCGGCGGAGCTATTGGGGAGAGGATCCTTAGGGACTACGTACAAAGCGGTGCTGGACAACCGATTGATTGTCACAGTGAAGCGACTTGATGCTGGTAAAATGGCTGCAGACACCAGCAAGGAAGTGTTCGAGCGTCACATGGAATCTGTGGGTGGGCTTCGGCATCCGAATTTGGTGCCGCTCAGGGCATATTTTCAGGCCAAGGAAGAGAGGCTTCTTATCTATGATTACGAGCCCAATGGCAGTGTTTTCTCCCTCATACACGGTTCGAGGTCAAGCAGGGCAAGGCCATTGCACTGGACATCGTGCTTAAAGATAGCAGAGGACGTAGCACAAGGGTTGTCCTACATCCACCAAGCATGGAGACTGGTCCATGGCAATCTCAAGTCCTCCAATGTTCTGCTTGGACCCGATTTCGAGGCATGCATCACTGATTACTGCCTCTCCATGTTGGCCAACCCATCCAGCTTTGATGAACACCCAGATTCCTCAGCATACAGAGCTCCAGAGACACGCAATCCAAATCACCAGCCAACCCCCAAATCCGACGTTTACGCCTACGGGGTTTTGTTGCTGGAACTTCTGACGGGTAAACCTCCTTCTCAGCACCCATTCTTAGTGCCGGCTGATATGGCAAGTTGGGTGAAATCCGTCAGGGAAGATAATGGAGGCGAAGACAATAGAATGGACATGCTGCTTGAGGTAGCCACAACTTGTAGCTTAATCTCGCCTGAGCATAGACCCACTATGTGGCAGGTCTTGAAAATGTTGCAGGAAATTAAAGAGATTGTATTATTAGAGGACAGTGAATTGGGCCTACGAACTGACATACTTGTTCGAAAACTAACCAAGCGTGAAATGGACTCGGACATGATTGAGGCGGAGATGGCATCGCAACAGCAGGTGGAGGTGGCGATGGCATCTAACTCCGGTCAGACTGACGTCGCCCGAGATTTACTCACATTGGCGAGGCAGCTCATCAATCAAGGGAAGCCTTCCCACGCTCTCCAAGCGGTGGTCATAGCTATGAAGAACAAAGGTGGGGATGAAGCTGTCTTTCAGTCCTTGCATCGTGCTCGGGAGCTGTACAGAAGTAGACTGAAAGAGAATGCTGCTGTTGATCAGCTAGCTTCTTTGTTTGCCGAGTGTGCCATTGCTGAAGCTCTGCCTGTAAAAATTGAATCATCTGCAAATAACATTGTCGGTGCATCGATTTCCCCAGATGCTCATGAGACCTCTATTCTGGCAGAAACTGGCAGGATGCAAGTAGTATTGGATGCAGTTTCTGACGGGAGCAGCTTCATCTGTTTAAAATGTGGGGGCCTTGTTAGTAACCATCGTAAAGAGGAGCACTATGCTTACTGGTGCTGTTAA 2571 0.4998 MLRSNHLPLPLHVQLFLLLLSYSSVFLSLSSTVAPSRPALNHPQPAFHSFLPSDALALLAFKSKADLNNHLHFSPNSSAVPFCQWQGVQCNAPKKIVRLVLQGLDLGGVFAPDTLSRLDQLRVLSLQNNSLTGPIPDLSALVNLKSLFLDNNYFTGSFPPSILSLHRLRTLDFSHNNLSGPIPFGLTKLDRFYYLRLSWNRFNGTIPPLNQSALRTFDVSGNNLTGPIPVTPTLVRVGPSSFSLNPGLCGEIIHKECHPIAPFFRPTAPVAVASPPTMALGQSARVHGVDGLIRQPYKKKHSRTAVIIGFATGVCVLIASLVCFVLGVKKQRNKEHLTNMMASDATATAEAAAVMQIEQEKELEEKVKRVQGMQVAKSGILIFCAGEAQLYTLDQLMRASAELLGRGSLGTTYKAVLDNRLIVTVKRLDAGKMAADTSKEVFERHMESVGGLRHPNLVPLRAYFQAKEERLLIYDYEPNGSVFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLSMLANPSSFDEHPDSSAYRAPETRNPNHQPTPKSDVYAYGVLLLELLTGKPPSQHPFLVPADMASWVKSVREDNGGEDNRMDMLLEVATTCSLISPEHRPTMWQVLKMLQEIKEIVLLEDSELGLRTDILVRKLTKREMDSDMIEAEMASQQQVEVAMASNSGQTDVARDLLTLARQLINQGKPSHALQAVVIAMKNKGGDEAVFQSLHRARELYRSRLKENAAVDQLASLFAECAIAEALPVKIESSANNIVGASISPDAHETSILAETGRMQVVLDAVSDGSSFICLKCGGLVSNHRKEEHYAYWCC 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1852 856 Gene3D Ribonuclease Inhibitor 52 211 IPR032675 -
Glsi08g1852 856 Gene3D Ribonuclease Inhibitor 212 259 IPR032675 -
Glsi08g1852 856 SUPERFAMILY Protein kinase-like (PK-like) 402 661 IPR011009 -
Glsi08g1852 856 Pfam Leucine rich repeat N-terminal domain 136 157 IPR013210 -
Glsi08g1852 856 Pfam Leucine rich repeat N-terminal domain 52 91 IPR013210 -
Glsi08g1852 856 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 660 IPR046959 -
Glsi08g1852 856 FunFam Nuclear pore complex protein NUP107 52 208 - -
Glsi08g1852 856 Gene3D Transferase(Phosphotransferase) domain 1 478 669 - -
Glsi08g1852 856 Pfam Protein kinase domain 401 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1852 856 ProSiteProfiles Protein kinase domain profile. 398 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1852 856 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515
Glsi08g1852 856 SUPERFAMILY L domain-like 51 230 - -
Glsi08g1852 856 MobiDBLite consensus disorder prediction 558 580 - -
Glsi08g1852 856 Gene3D Phosphorylase Kinase; domain 1 369 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1852 Glsi-ChrGlsi08 13103480 13110066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1852 25 670 Receptor kinase-like Gene Family AT5G43020 59.789 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi08g1852 Pkinase 2.9e-32 CL0016