Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1836 ATGGGGAGAGTGAAGCTTCAGATCAAGAAGATTGAGAATGCAACAAATAGGCAGGTTACTTTCTCAAAGAGGAGGAATGGACTAATCAAGAAAGCTTATGAACTTTCTGTTCTTTGCGACGTTGATGTAGCTCTAATCATGTTTTCCACCTCCGGGAGAGCTAGTCTTTTCTCTGGTAACAAAAGCATTGAAGAAATACTTGAACGATATCTTAATCTTCCTGAGCACGAACGCGGAAGGATATTCGAAGGAGACCCTTCTGAAATCACAACACTTTGTGAAGCTGAATACTGGGAACACGTCCTTCTGGAAACTCTAAAACAAGTGCAGCTGCGAAAAGTACATGTTGCAAAACCCATGAATGTAGATGTAGATGGATTTGGTAGCGGAAGCTCAAAGGACATGGCGGAATGGGTTCCACGCGGAGATCAGGTCCTGAACTTGGCGGATGCCAGCAATGGCTTTCTTCCTCTAAGGGGTCAAGGATCGCACACTGTTGTTGATATGTTTGAGCATGCCCAAAATTACATGGATCGGGAAGGTCACACTAGTCCAAGAGGTGGATTAGATCAGGATGATTCTGTACAAGTTATTGACATCAACTCCTCCCCTTGGGGAGCAGAGAGCGGATCTTTTCCAGTTGAAGGGACAAGGGGAGGACAACCACTTGAACTGCATAAGGAGATGGAGACTCGCGCTGCAAAGAGGAGGGTAGCCTCTGCCACCTTAGCCCAGAACCGATCTCCCAAAAGGAAGCGGGTAGTGTTAGGGGAACTTCCCAATTTATCCAACCTCACTGATCCTGTGACTTTGAATCCGGGGTTGGAGCCGCAGAAACCGAAATTTCGAAAGAATACGAGGGTTAAGAAGGGTGTGGCGACAAAGGAGAGACTCTCTTTGGAGGATCCCAAGTTGGACTATACGGAGGTTGAGGTGAAGAAGGCAGTCGACACCGATGCGCAGTTGGATGATCTGCAAAAAAGCGAGCCTTATGTTTCGGACATTTATAAGTATCTGCGAAATATGGAGATGGAGCCAAGAAGAAGACCAACACTTGACTACCTCGAGAAGATTCAGAAAGATGTTACTGCCAACATGAGAGGGATATTGGTTGATTGGTTAGTGGAAGTTGCTGAGGAGTACAAGCTTCTCCCTGACACTCTTTACCTCTCTGTTTCCCACATAGATCGCTTTCTTTCTGCTAATCAAGTCAATAGGCAGAAGCTTCAGTTACTGGGTGTTTCATCCATGCTTATTGCATCGAAGTATGAGGAAATTAGCCCTCCGCATGTGGAAGAGTTCTGCTACATCACTGATAACACGTACACCAAGGCAGAGGTCGTAAATATGGAGGCTGCTATACTCAAGTCTCTAAATTTTGAAATGGGCAATCCTACCGTAAAGACGTTTCTAAGGCAAGAGTTCTCTGAAAACACCCCAAATTTGCAGTTTGAGTTTCTCGGCTACTATCTTGGCGAGCTAAGTTTGTTGGATTATAATTGTATAAAATTCCTGCCTTCTCTGGTGGCTGCTTCAGTCATATTTCTTGCTAGATTTATTATCCGGCCTAAGGTGCATCCCTGGCATTCAGCCCTGCAAGAATGCTCGGGATATAAGTCAGTTGAGTTGAAAGAATGTGTACTTACCTTACACGACTTGTATTTGGCAAGAAGAGGAGGGGCCTTGCAAGCTATACGGGAGAAATACAAACAGCACAAGTTTAAATATGTGGCCACCCTGCCTTCCCCTCCGGAGATACCAATTTCTTACTTTGAAGAAGACTAA 1785 0.451 MGRVKLQIKKIENATNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSTSGRASLFSGNKSIEEILERYLNLPEHERGRIFEGDPSEITTLCEAEYWEHVLLETLKQVQLRKVHVAKPMNVDVDGFGSGSSKDMAEWVPRGDQVLNLADASNGFLPLRGQGSHTVVDMFEHAQNYMDREGHTSPRGGLDQDDSVQVIDINSSPWGAESGSFPVEGTRGGQPLELHKEMETRAAKRRVASATLAQNRSPKRKRVVLGELPNLSNLTDPVTLNPGLEPQKPKFRKNTRVKKGVATKERLSLEDPKLDYTEVEVKKAVDTDAQLDDLQKSEPYVSDIYKYLRNMEMEPRRRPTLDYLEKIQKDVTANMRGILVDWLVEVAEEYKLLPDTLYLSVSHIDRFLSANQVNRQKLQLLGVSSMLIASKYEEISPPHVEEFCYITDNTYTKAEVVNMEAAILKSLNFEMGNPTVKTFLRQEFSENTPNLQFEFLGYYLGELSLLDYNCIKFLPSLVAASVIFLARFIIRPKVHPWHSALQECSGYKSVELKECVLTLHDLYLARRGGALQAIREKYKQHKFKYVATLPSPPEIPISYFEED 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1836 594 FunFam Cyclin A1 452 579 - -
Glsi08g1836 594 CDD CYCLIN_AtCycA-like_rpt2 465 574 - -
Glsi08g1836 594 FunFam Mitotic cyclin 6 350 450 - -
Glsi08g1836 594 Gene3D - 334 579 - -
Glsi08g1836 594 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Glsi08g1836 594 Gene3D - 348 463 - -
Glsi08g1836 594 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Glsi08g1836 594 MobiDBLite consensus disorder prediction 267 290 - -
Glsi08g1836 594 Pfam Cyclin, C-terminal domain 465 582 IPR004367 -
Glsi08g1836 594 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Glsi08g1836 594 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi08g1836 594 PANTHER CYCLINS 313 571 IPR039361 -
Glsi08g1836 594 SUPERFAMILY Cyclin-like 323 462 IPR036915 -
Glsi08g1836 594 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Glsi08g1836 594 Pfam Cyclin, N-terminal domain 334 462 IPR006671 -
Glsi08g1836 594 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi08g1836 594 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi08g1836 594 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi08g1836 594 SMART Cyclin_C_2 465 583 IPR004367 -
Glsi08g1836 594 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Glsi08g1836 594 SMART cyclin_7 372 456 IPR013763 -
Glsi08g1836 594 SMART cyclin_7 469 552 IPR013763 -
Glsi08g1836 594 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi08g1836 594 SUPERFAMILY Cyclin-like 465 585 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1836 Glsi-ChrGlsi08 12997007 13002504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1836 231 593 Core Cell Cycle Gene Families AT5G43080 56.319 5.29e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi08g1836 Cyclin_N 2.2e-42 CL0065
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1836 08 12997007 13002504 Glsi08g1836 08 12997007 13002504 ECH