Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1834 ATGAGTGCTGAGTCGCGAGAAGACGAGTCCAAAGAAGATGATAGGGACCAAGAAGTGAGCCGCCTACTGCAACCTCAATCTGAGTCACAGCCATCGTCATTGGACGATGAAGAGGTCGCATATGAAACTGGGGAGAACATCCTTATACTCAATTTGGACTCCGCCGATGATGACAATTCAGCGACGGTGCCGCCTTTCTCGTGGAAGAAACTATGGCTATTCACCGGCCCTGGATTCCTGATGAGCATAGCTTTTCTGGATCCGGGAAATCTCGAAGGGGATCTCCAGGCCGGAGCCATCGCCGGCTACTCCTTGCTCTGGCTATTGATGTGGGCCACTATCATTGGTTTGTTGATTCAGCTTCTATCCGCAAGGATTGGGGTCGCCACGGGTCGTGACTTGGCGCAGCTGTGCAGGGAGGAATATCCCAATTGGGCTCGCTTTGTGCTCTGGTTCATGGCGGAGGTTGCCTTAATTGGTGCTGATATTCAAGAGGTCATTGGTAGTGCAATCGCTATACAAATTCTGAGCCACGGGGTGTTACCGCTCTGGGCTGGAGTCATAATTACTGCTTCGGATTGTTTCATCTTTCTATTTCTTGAGAACTACGGAGTGAGGAAGTTGGAGGCTGCTTTTGCAGGTCTCATCATGACTATGGCTCTTTCTTTTGCCTGGATGTTTGGTGACGCAAAACCTAATGGAAAAGAACTTTTGATGGGTATTTTGGTTCCGAGACTCAGCTCAAAGACAATTCGCCAGGCTGTGGGAGTTGTGGGTTGTGTCATAATGCCTCACAATGTATTCCTGCATTCTGCTTTGGTGCAGTCAAGGAAAGTTGATCCCCAGAAGAAAGGGCGGGTACAGGAGGCTCTGAACTACTATTCCATTGAGTCATCTGCTGCACTTCTAGTCTCCTTCATGATCAATCTGTTTGTCACTACGGTTTTTGCTAAGGGGTTTTATGGTACAAAGCAGGCCAATAACATAGGATTGGTAAATGCAGGGCAGTTCCTTCAGGAACAGTATGGAGGAGGATTCTTCCCCATTCTTTATATATGGGGTATTGGGTTACTGGCAGCTGGACAGAGTAGTACAATCACTGGCACATATGCTGGGCAATTCATAATGGGCGGTTTTCTCAACCTTCGTTTAAAGAAATGGCTGAGGGCATTGATCACTCGATGTTTTGCAATTGTGCCGACCATAGTTGTAGCTATTGTTTTTAATACCTCAGAAGCCTCATTGGACGTTTTGAATGAATGGCTTAATGTGCTTCAGTCCATGCAAATTCCTTTTGCACTAATACCTCTCCTCACCTTGGTCTCCAAAGAGCAGGTCATGGGAATCTTTAGGGTTGGGCCTGTTCTTGAGAGGGTGGCATGGACTGTTGCTGCGCTGATAATAGTGGTTAATGGGTATCTCTTGTTAGATTTCTTCGTTTCTGAGGTGAACAGCACGCTGCTTGGTTTGGTAGTCTGCTCGTGTACAGCTGCATATGTGGTATTCATTGTATATTTGGTTTCAAGAAGTGGTGCTCTTCCTTCCACTTGGGTAAATTTGCTTCCCAAGGGATTTTCTTGGATTTAA 1587 0.4682 MSAESREDESKEDDRDQEVSRLLQPQSESQPSSLDDEEVAYETGENILILNLDSADDDNSATVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATIIGLLIQLLSARIGVATGRDLAQLCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITASDCFIFLFLENYGVRKLEAAFAGLIMTMALSFAWMFGDAKPNGKELLMGILVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKVDPQKKGRVQEALNYYSIESSAALLVSFMINLFVTTVFAKGFYGTKQANNIGLVNAGQFLQEQYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRCFAIVPTIVVAIVFNTSEASLDVLNEWLNVLQSMQIPFALIPLLTLVSKEQVMGIFRVGPVLERVAWTVAALIIVVNGYLLLDFFVSEVNSTLLGLVVCSCTAAYVVFIVYLVSRSGALPSTWVNLLPKGFSWI 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1834 528 MobiDBLite consensus disorder prediction 1 21 - -
Glsi08g1834 528 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 45 508 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1834 528 MobiDBLite consensus disorder prediction 1 38 - -
Glsi08g1834 528 NCBIfam Nramp family divalent metal transporter 76 445 - -
Glsi08g1834 528 Pfam Natural resistance-associated macrophage protein 92 453 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1834 528 PRINTS Natural resistance-associated macrophage protein signature 361 380 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1834 528 PRINTS Natural resistance-associated macrophage protein signature 205 226 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1834 528 PRINTS Natural resistance-associated macrophage protein signature 389 406 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1834 528 PRINTS Natural resistance-associated macrophage protein signature 423 442 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1834 528 PRINTS Natural resistance-associated macrophage protein signature 180 199 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1834 528 PRINTS Natural resistance-associated macrophage protein signature 150 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1834 528 PRINTS Natural resistance-associated macrophage protein signature 254 277 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1834 528 MobiDBLite consensus disorder prediction 22 36 - -
Glsi08g1834 528 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 69 447 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi08g1834 528 Hamap Divalent metal cation transporter MntH [mntH]. 57 479 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1834 Glsi-ChrGlsi08 12987717 12990681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1834 1 510 Inorganic Solute Cotransporters AT1G47240 76.712 0.0 805