Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1823 ATGGCTCTGGAAGCTCTCAAATCACCCTCCACCGCTACACCTTCCTTCCCCTTCCAACCCCCCGACATGGAGGCATCCCCATGGGCCAAGCGAAAGCGTTCCAAGCGTAACCGCCTTCACCACCCCTCCTGCACTGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGTGGCCCCACCGCCTCCACTTCTACCCCTCCTCTGCTGTCTGACTCGGCGCTCACATATCCCTCCGCCGCTGACAGCCTCAGTTACAAATGCTCTGTTTGCAACAAAGCCTTCTCCTCTTACCAAGCTCTTGGGGGACACAAGGCCAGTCATCGAAGACTCGCCGGGGAAGATCAGCTCACTTCCTCCGCCGTCACAAGTACTACTTCGGCTACCACCACCACCACTGCATCTAACGGTGGAGGTAGGCTGCACGAGTGTTCCATCTGTCATAAGTCCTTTCCCACCGGACAGGCGTTGGGTGGACACAAACGTTGCCACTACGATGGCGGTTCGGCCGCTGGCGGCGTTAGCAGTGCTGCCACTGCCTCGGAAGGTGTTGGGTCCACCCATACCATCAATCACTGCCACCGTGATTTCGATCTCAACCTCCCTGCTTTGCCGGACTTTTCAGCCAAGGTTTTCGTGGCAGCAGGGGACGAGGAGGTCGAGAGCCCTCTGCCACTGAAGAAGCCCCGCTTTTGGATGACACCCAAGATCGAAATACCTCAAGAGCAGTGA 735 0.5782 MALEALKSPSTATPSFPFQPPDMEASPWAKRKRSKRNRLHHPSCTEEEYLALCLIMLARGPTASTSTPPLLSDSALTYPSAADSLSYKCSVCNKAFSSYQALGGHKASHRRLAGEDQLTSSAVTSTTSATTTTTASNGGGRLHECSICHKSFPTGQALGGHKRCHYDGGSAAGGVSSAATASEGVGSTHTINHCHRDFDLNLPALPDFSAKVFVAAGDEEVESPLPLKKPRFWMTPKIEIPQEQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1823 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Glsi08g1823 244 MobiDBLite consensus disorder prediction 110 138 - -
Glsi08g1823 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 165 IPR013087 -
Glsi08g1823 244 Pfam C2H2-type zinc finger 87 111 - -
Glsi08g1823 244 Pfam C2H2-type zinc finger 143 167 - -
Glsi08g1823 244 Gene3D Classic Zinc Finger 85 165 - -
Glsi08g1823 244 SUPERFAMILY beta-beta-alpha zinc fingers 87 165 IPR036236 -
Glsi08g1823 244 SMART c2h2final6 87 109 IPR013087 -
Glsi08g1823 244 SMART c2h2final6 143 165 IPR013087 -
Glsi08g1823 244 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Glsi08g1823 244 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Glsi08g1823 244 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 31 206 IPR044653 GO:0003700
Glsi08g1823 244 MobiDBLite consensus disorder prediction 114 138 - -
Glsi08g1823 244 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1823 Glsi-ChrGlsi08 12914798 12915532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1823 1 240 C2H2 Transcription Factor Family AT1G27730 49.799 9.68e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi08g1823 zf-C2H2_6 9.8e-13 CL0361