Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1815 ATGAGAAAGATGGCACTTCAGGAAATAGACTGGAATGCTGAAATAATGGATCATCTTACATTTGCATTTTCAGTGACTGGGATGTTCGAATTATTGGCAGATAATGTGGAGCAGATCCTTCCAGGTATCTATAATCAAGCTGAGAGATGGTACTTTCTTGCCCTTTGTTATAGTGCAGCAGGACAGAATGAAGCAGCGTTGAATCTTTTGAGGAAGGCATGTGGTAGTTCTGAAGCAAAGCATAGACCCGATTTTCCTTCGTTATTGTTTGGAGCAAAACTGTGTTCCCAAGATTTTAATCATGCTCATGAAGGCATTACCTTTTCATGTAAAGTAATCGATCTCGCTAAGTATCAAAATGGGCATTTTTTGGGTCAAGGCCATAAATTTCTTGGTATTTGCTATGGGGATAAAGCTAGAATTTCTGTGCTTGATTCTGAAAGATTCATATTTCAAAGACAGTCTTTGGACTCTCTAAATCATGCTGCTGAAAAAGGAAATGATGATCCAGAAGTGATATTCAGCCTTGGACTTGAAAATGCAGTTCAAAGGAATCTGGATGCAGCTTATGACAATGCAATGATGTACTCAGACATGATTATTGGCAGCTCAGGAAGAGGTTGGCAATTGTTAGCACTCATAGTATCTGCACAGCAGCGGCTTAAGGATGCTGAAACCATAGTTGATTTTGCTTTAGATGAGGCTGGGAGGAAGGATCAGTTAAAACTTCTAAGATTGAAAGCTGTATTTCAAATTGCTCAGCAGCAACCCAAGCAAGCAGTAGAGACCTACAGAATCTTGCTGGCGCTAATTCAAGCAAACAAGGAGCATGGGCTTCAAACTAAAAACTTCGATGAAGCTAACACATTCAGCCATGAGGCATTAACAGAAAGAAACTTGGAAATTGAAGCTTGGCAGGATTTGGCTACCATTTATGCCAATCTTGGTTCGTTGCCTGACGCAAAAGCTTGTGTTGACAAAGCCCAGTTGATAGAATTTTTTTCCCCTGGAAGGACATCGTTTGAAGTTCAATCCTTATACAAGGAGGCCTTTATTTCCTTCTTAATCTCATTGTCAATAGAACCAGATTACATTCCCAGTATCATTTCAACTGCGGAGTTGTTGCTGAAACTCGGTATGCAATCACTTCCGATTGCAAGAAGCTTTTTAATGAATGCTTTGCAGTTAGAACCCACAAACCATGTTGCATGGTTCAACCTTGGAGTGGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTTCTTTCAAGCTGCTTATGAGCTAAATCTTTCAGCTCCAGTGCAGAAATTTTGA 1320 0.3992 MRKMALQEIDWNAEIMDHLTFAFSVTGMFELLADNVEQILPGIYNQAERWYFLALCYSAAGQNEAALNLLRKACGSSEAKHRPDFPSLLFGAKLCSQDFNHAHEGITFSCKVIDLAKYQNGHFLGQGHKFLGICYGDKARISVLDSERFIFQRQSLDSLNHAAEKGNDDPEVIFSLGLENAVQRNLDAAYDNAMMYSDMIIGSSGRGWQLLALIVSAQQRLKDAETIVDFALDEAGRKDQLKLLRLKAVFQIAQQQPKQAVETYRILLALIQANKEHGLQTKNFDEANTFSHEALTERNLEIEAWQDLATIYANLGSLPDAKACVDKAQLIEFFSPGRTSFEVQSLYKEAFISFLISLSIEPDYIPSIISTAELLLKLGMQSLPIARSFLMNALQLEPTNHVAWFNLGVVSKMEGSLQQAADFFQAAYELNLSAPVQKF 439
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1815 439 SMART tpr_5 47 80 IPR019734 GO:0005515
Glsi08g1815 439 SMART tpr_5 401 434 IPR019734 GO:0005515
Glsi08g1815 439 SMART tpr_5 241 274 IPR019734 GO:0005515
Glsi08g1815 439 SMART tpr_5 302 335 IPR019734 GO:0005515
Glsi08g1815 439 ProSiteProfiles TPR repeat profile. 401 434 IPR019734 GO:0005515
Glsi08g1815 439 Pfam Tetratricopeptide repeat 47 77 IPR019734 GO:0005515
Glsi08g1815 439 Coils Coil 214 234 - -
Glsi08g1815 439 SUPERFAMILY TPR-like 155 329 IPR011990 GO:0005515
Glsi08g1815 439 Gene3D Tetratricopeptide repeat domain 279 437 IPR011990 GO:0005515
Glsi08g1815 439 Gene3D Tetratricopeptide repeat domain 3 278 IPR011990 GO:0005515
Glsi08g1815 439 PANTHER PROTEIN NPG1 1 439 IPR043376 -
Glsi08g1815 439 SUPERFAMILY TPR-like 43 192 IPR011990 GO:0005515
Glsi08g1815 439 SUPERFAMILY TPR-like 280 425 IPR011990 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi08g1815 Glsi-ChrGlsi08 12861706 12863451 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1815 1 439 Calmodulin-binding Proteins AT1G27460 53.363 1.22e-167 486
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0425 10 2726266 2729130 Glsi08g1815 08 12861706 12863451 CCT
Glsi08g1815 08 12861706 12863451 Glsi08g1815 08 12861706 12863451 ECH