Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1811 ATGGCGTTTGCAGGAACAACCCAGAAGTGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGCTTACTGCGGATAACCGAGTGTACCACAAGGCTTGCTTCAGATGCCATCACTGCAAAGGAACCCTCAAGCTTAGCAACTACAATTCTTTCGAGGGAGTTCTTTACTGCAAGCCACACTTCGACCAATTGTTCAAGAGAACCGGTAGCCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACCATTGATAATGAGAAAGCTGCAGCAACCAAAGTGTCAAGTATGTTTGGTGGAACCAGGGATAGATGTGCTGGTTGTCAGAAAACGGTCTATCCAACTGAGAAGGTTACCGTGAATGGAACTCCTTACCACAAGAGTTGTTTCAAATGCTCCCATGGAGGATGCGTTATCAGTCCTTCCAACTACATTGCACACGAGGGAAGACTCTACTGCAAACACCACCATATCCAACTGATCAAGGAGAAGGGCAATTTAAGCCAGCTTGAAGGTGACCATGAGAAGAGTGCAATCAGTGGTGAAGAAGTTGCTGCCGAGACATGA 582 0.4536 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKTIDNEKAAATKVSSMFGGTRDRCAGCQKTVYPTEKVTVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHIQLIKEKGNLSQLEGDHEKSAISGEEVAAET 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1811 193 PANTHER OS06G0237300 PROTEIN 4 93 - -
Glsi08g1811 193 FunFam LIM domain and actin-binding 1 104 174 - -
Glsi08g1811 193 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Glsi08g1811 193 MobiDBLite consensus disorder prediction 172 187 - -
Glsi08g1811 193 SMART lim_4 9 61 IPR001781 -
Glsi08g1811 193 SMART lim_4 109 161 IPR001781 -
Glsi08g1811 193 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Glsi08g1811 193 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Glsi08g1811 193 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Glsi08g1811 193 MobiDBLite consensus disorder prediction 172 193 - -
Glsi08g1811 193 CDD LIM2_SF3 110 170 - -
Glsi08g1811 193 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Glsi08g1811 193 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Glsi08g1811 193 CDD LIM1_SF3 6 68 - -
Glsi08g1811 193 Gene3D Cysteine Rich Protein 4 74 - -
Glsi08g1811 193 Gene3D Cysteine Rich Protein 105 174 - -
Glsi08g1811 193 Pfam LIM domain 110 164 IPR001781 -
Glsi08g1811 193 Pfam LIM domain 10 64 IPR001781 -
Glsi08g1811 193 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Glsi08g1811 193 FunFam LIM domain and actin-binding 1 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1811 Glsi-ChrGlsi08 12841772 12843310 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Glsi08g1811 LIM 2.7e-13 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0428 10 2741031 2742706 Glsi08g1811 08 12841772 12843310 CCT
Glsi08g1811 08 12841772 12843310 Glsi08g1811 08 12841772 12843310 ECH