Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1801 ATGGGAACTAAGAAAGCTACGAACATGTCAGGCTTTGTGGACGAGGATGACCTCGATGAAGAACCCGGGGAGGTCATCGAGTCGGCACCGCCCCAAAAGGTTGGCGAAGAGAGGGAGCTCCATAGCTCTCGTCTTAAAAAGAAACTCCTGAAGCTTGGGCATGGATGGGAGACCCCCGAGTTCAATGACGAAGTAACTGTTCACTATGTGGGGACTTTGCTTGACGGGACAAAGTTCGATTCCACTAGAGATAGAGGTGAACCTATTACATTTACACTTGGTCAAGCCGAAGGGGTTGCTGGGTTAGATCACGGGATTATCACCATGAAAAAGGGGGAGGTCGCAATGTTCACATTAACTGCTGAGTCGGGCTATGAAGTTAAGAATTCTGGAGATATTCCACCCAACTCAGTCATACAGTTTGAGGTCGAACTCATTTCGTGGATCACGGTGGTAGATATTTGCAGAGATGGTGGGCTTCTCAAGAAAATTATGGAGAAGGGGAGCAGGAATGAGCGACCCAGTGATCTAGATGAAGTTCTTGTGAAGTATCAGGTGGTACTAGTTGACGGCACTATTGTTATGGAAACACCAGAAGAGGGAATTGAATTCCATGTGAAAGATGGTCTTCTTATTCAAGGATTGCCGAAAGTAATTATGACTATGACAAGGGGAGAGAAGGCTAGGTTAATCGTTGAACCTCAGTATGCCTTTGGGGAGAAAGGGAGAGAAGCTGGCAGTGGGGTCCATTCAATTCCGCCAAATTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTTAAGCCTGTTATTAATGTTACTGGTGACTTCAAGGTACTTAAGAAGATTCTGAAAGAAGGGGAGGGTTCTCTCACAGCCAATGAGGGTGCAACTGTTACTATTAACTATGTAGCTATGATAGAAGATGGAACTATATTTGAGAAAAAAGGAACTGATGAAACAATGCCCTTGGAATTCATAACTGATGAAGAACAAGTGATTGTTGGTCTAGATCGAGCTGTGGCAACAATGAAGAAGGGTGAGAGGGCCATAATAAGTATACATCCTGATTATGCATTTGGAAATGCTGAAGCGAGATGTGATTATGCTGTTGTTCAACCAGGGTCCAATGTAGTGTATGAAGTTGATATGATCGATTTTATTAAGGAGAAAGCACCGTGGGAATTGAATAATAATGAGAAAATTGAGACAGCTGAAAGGAAGAAAGAAGAAGGGAATCTATTATTTAAAAATGGAAAGTATCAGAGAGCAGGGAAGAAGTATGACAAGGCTGCTGATTATGTTAGTGAAGATGGATCCTTTGGGGATGATGAGCAAAAGCTAGCAAAGGCACTAAGAGTGTCATGCTGGTTGAATGGCGCAGCATGTAACCTCAAACTCAATGACTTTTTAGGAGCAATCAAGTTATGCTCAAAGGTGCTCGATCTTGAGTTCTACAATGTGAAAGCTTTGTACAGACGAGCGCAAGCATATATAGAAACTGGGGACTTTCCTTTGGCAGATGTAGACATCAAGAAAGCTCTTGAGGCGGACCCACAGAACAGGGAGGTAAAGGTGATTCAGAGGAAACTGAAGCAACTTCAAGCTGAGAGTGACAAAAGAGATGCTAAGCTCTTCGCAAATATGTTTGCACGTAATGCGAAAGACTTGCCTGTGGCAGCAAAGAGAATGAAGGTTGAGAAAACCGAGGAGGAAAGGAAAGATGAAGAGGTGGTGAGTATGGAAATGGGCAACGTTGCTGATAGTGCAGCTCCTCCAGAGTCCTGA 1788 0.4368 MGTKKATNMSGFVDEDDLDEEPGEVIESAPPQKVGEERELHSSRLKKKLLKLGHGWETPEFNDEVTVHYVGTLLDGTKFDSTRDRGEPITFTLGQAEGVAGLDHGIITMKKGEVAMFTLTAESGYEVKNSGDIPPNSVIQFEVELISWITVVDICRDGGLLKKIMEKGSRNERPSDLDEVLVKYQVVLVDGTIVMETPEEGIEFHVKDGLLIQGLPKVIMTMTRGEKARLIVEPQYAFGEKGREAGSGVHSIPPNSVLHVNIELVSFKPVINVTGDFKVLKKILKEGEGSLTANEGATVTINYVAMIEDGTIFEKKGTDETMPLEFITDEEQVIVGLDRAVATMKKGERAIISIHPDYAFGNAEARCDYAVVQPGSNVVYEVDMIDFIKEKAPWELNNNEKIETAERKKEEGNLLFKNGKYQRAGKKYDKAADYVSEDGSFGDDEQKLAKALRVSCWLNGAACNLKLNDFLGAIKLCSKVLDLEFYNVKALYRRAQAYIETGDFPLADVDIKKALEADPQNREVKVIQRKLKQLQAESDKRDAKLFANMFARNAKDLPVAAKRMKVEKTEEERKDEEVVSMEMGNVADSAAPPES 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1801 595 ProSiteProfiles TPR repeat profile. 488 521 IPR019734 GO:0005515
Glsi08g1801 595 MobiDBLite consensus disorder prediction 1 37 - -
Glsi08g1801 595 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 62 149 IPR001179 GO:0003755
Glsi08g1801 595 PANTHER PEPTIDYLPROLYL ISOMERASE 151 269 - -
Glsi08g1801 595 MobiDBLite consensus disorder prediction 563 581 - -
Glsi08g1801 595 SMART tpr_5 454 487 IPR019734 GO:0005515
Glsi08g1801 595 SMART tpr_5 405 438 IPR019734 GO:0005515
Glsi08g1801 595 SMART tpr_5 488 521 IPR019734 GO:0005515
Glsi08g1801 595 FunFam Peptidylprolyl isomerase 269 390 - -
Glsi08g1801 595 Gene3D - 35 151 IPR046357 GO:0003755
Glsi08g1801 595 SUPERFAMILY FKBP-like 276 407 - -
Glsi08g1801 595 SUPERFAMILY FKBP-like 156 269 - -
Glsi08g1801 595 SUPERFAMILY TPR-like 399 541 IPR011990 GO:0005515
Glsi08g1801 595 Gene3D Tetratricopeptide repeat domain 391 548 IPR011990 GO:0005515
Glsi08g1801 595 Gene3D - 270 390 IPR046357 GO:0003755
Glsi08g1801 595 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 296 388 IPR001179 GO:0003755
Glsi08g1801 595 Coils Coil 517 537 - -
Glsi08g1801 595 Gene3D - 152 268 IPR046357 GO:0003755
Glsi08g1801 595 SUPERFAMILY FKBP-like 41 151 - -
Glsi08g1801 595 FunFam Peptidylprolyl isomerase 393 548 - -
Glsi08g1801 595 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 292 385 IPR001179 GO:0003755
Glsi08g1801 595 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 57 146 IPR001179 GO:0003755
Glsi08g1801 595 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 265 IPR001179 GO:0003755
Glsi08g1801 595 MobiDBLite consensus disorder prediction 563 595 - -
Glsi08g1801 595 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 268 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1801 Glsi-ChrGlsi08 12803283 12808952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1801 33 552 Calmodulin-binding Proteins AT3G25230 55.939 0.0 570