Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1798 ATGCCTCTGTATCAACCTTCTAATGGGAGAAGGGATGGGGATGTGAAGCTTGATGTGGGTAGTGGCGCCGAGTTGCTCGATCTAGAAACTGCAGTGAAAGATGGGGTTTCGGATGGCCAAGCTGTCCTAACCGGTGGCGGTTGCGGCCGCGGCGTCGCTGACAGAATGGATCTGAAGGTGTTGATTGAGGAGCTGGAGTCAGTTGATGTACCGCCGGTGTTTATCTGTCCAATCTCATTAGAGCCAATGCGAGACCCCGTGACCCTTTGCACGGGTCAGACCTATGACAGATCCAATATTCTCAAATGGTTCACTCTGGGTCATAGTACATGTCCCACAACAATGCAGGAGCTCTGGGACGATTCAGTGACGCCAAACAGGACTCTCAACCAATTAATTCATACTTGGTTCTTGCAGAAATACCTTTCAATGAAGAAGCAGTTCGAGGATGTGCAAGGAAGGGCTTTGGAGCTCTTGGAGACGCTCAAGAAGGTGAAGGGTCAAGCTAGAGTTCAAGCTCTTAAAGATCTTAGGCAGATTGTAGCAGCCCATGCGTCCACAAGGAAGACAATTACAGAGAATGGTGGGCTTGCTCTAATTTCTTCTTTGCTGGGTCCTTTCACTTCGTACGCGGTTGGGTCGGAAGCAATTGGAATTCTTGTGAATTTAGATTTGAATTCAGAGTTGAAGAAAAATCTGATGCATCCGGCGAAGATATCATTGTTAGTTGATATTATGAATGAGGGAACGATCGAGACAAAGATGAATTGTGCCAAATTGATTGAATCATTGTTGATGGAAGGGAATGAGTCGAAGACGGAGATTGTGTCAAGCTTGAGTCTTTTGGTTGGATTATTGAGGTTGGTGAGGGATAAGAAACACCCAACTGGGGTCTTAACTGGACTCGTATTACTGAAGATTGTGTGTTCCCACGAATCAGTTAGGAGCTCCATCGTAAGCCTAGGAGCAGTTCCTCAGTTGATTGAGCTTTTACCCAGTTTAAATAACGAGTGCTTAGAGATAGCCCTGTGTATTCTAGAGGTATTGTCAACTCTTCCTGAGGGAAGATTGGCTTTGAAAGAATGCCCAAACATCATACCCAATGTGGTGAAGTTATTGATGAGAGTCTCAGAGAGTAGCACTCAATTCGCATTGTCAATATTGTGGGCTATCTACAAGCTTGCCCCAGAAGAATGTGCTTCACAGGCTGTGGAGGCCGGTTTGGCGGCGAAGCTGCTGCTTGTAATTCAGAGCGGTTGCAACCCAGTGTTAAAGCAGATGTCTACCGAGTTCTTGAAATTGTGCAGTCTAAATTACTCTTCTAGTATCTTGATTTCTAAGTGTATGCTCACCAAAACAATACAATGA 1368 0.4554 MPLYQPSNGRRDGDVKLDVGSGAELLDLETAVKDGVSDGQAVLTGGGCGRGVADRMDLKVLIEELESVDVPPVFICPISLEPMRDPVTLCTGQTYDRSNILKWFTLGHSTCPTTMQELWDDSVTPNRTLNQLIHTWFLQKYLSMKKQFEDVQGRALELLETLKKVKGQARVQALKDLRQIVAAHASTRKTITENGGLALISSLLGPFTSYAVGSEAIGILVNLDLNSELKKNLMHPAKISLLVDIMNEGTIETKMNCAKLIESLLMEGNESKTEIVSSLSLLVGLLRLVRDKKHPTGVLTGLVLLKIVCSHESVRSSIVSLGAVPQLIELLPSLNNECLEIALCILEVLSTLPEGRLALKECPNIIPNVVKLLMRVSESSTQFALSILWAIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSTEFLKLCSLNYSSSILISKCMLTKTIQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1798 455 Pfam U-box domain 70 140 IPR003613 GO:0004842|GO:0016567
Glsi08g1798 455 SUPERFAMILY ARM repeat 239 439 IPR016024 -
Glsi08g1798 455 SUPERFAMILY RING/U-box 64 140 - -
Glsi08g1798 455 Gene3D - 148 301 IPR011989 -
Glsi08g1798 455 Gene3D - 302 441 IPR011989 -
Glsi08g1798 455 CDD RING-Ubox_PUB 71 123 IPR045210 -
Glsi08g1798 455 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Glsi08g1798 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 147 IPR013083 -
Glsi08g1798 455 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Glsi08g1798 455 PANTHER WDSAM1 PROTEIN 64 442 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1798 Glsi-ChrGlsi08 12777024 12778391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1798 1 455 U-box Gene Family AT3G49810 61.538 0.0 551
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1798 08 12777024 12778391 Glsi08g1798 08 12777024 12778391 ECH