Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1791 ATGGATTCTGATCAAGCGAAATTGTTCGTCGGTGGCATTTCTCGGGACACCACCGAAGATATTCTGAAAGACCACTTCGCTAAGTACGGCTCTGTTTTGGGTTCGACGATTTCGTTAGACCGAAGCACAAGACATCCCAGAGGCTTTGGCTTCGTTAGGTTCTCTGATCTGTCTGCGGCTGATAAAGCTCTTCACGACAAGCATGTTATACTAGGAAGAACGGTAGAAGTGAAAAAAGCAATACCCAGAAGTGGACAGCAACATCATTACCTACCACAGACTAGGGGGACGAGTATCTGTATCAGTCATGACAGTAGCAGTGACCATGTTAGGACTAAAAAGATTTTTGTAGGAGGCTTGTCAGCAAGTATATCTGAAGAGGAGTTTAAGAAATATTTTGAGAGATTTGGTAGAATAACGGATGTAGTGGTGATGCAGGACAGTGTAACTCAGCGGCCTCGGGGTTTTGGGTTCATCACTTTTGATTCAGAAGACTCCGTTGAAAATGTTATGTTGAAAAACTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCAGTGCCGAAAGAGGGAAACAATGGTGGTGATAGTTTTCATAAATTGAGATACAGGAGTGGAAGAGGAGCCCCCAAAAGTTCCCCTCATTATAATCCTAAGTATATGCTCCCTGGCTTTGCACCTCTTTCCTGGTATAGCAGTGATGGAGTATATTTTTATGGATTAAACACCTATAGTTCTTGGTACCCTGTCGGAGGGTATTGGGGGAATGGACATGCAGTTCCATCTGATGCTCTTAGGAACTACTGGTATCAGCCCATGGTAACCAGTCCTCAGGCATGCCAGGTGCCCTACGCCAACGCTTTGCCTAGCCCTGCGCATGAGTGGTAG 894 0.4541 MDSDQAKLFVGGISRDTTEDILKDHFAKYGSVLGSTISLDRSTRHPRGFGFVRFSDLSAADKALHDKHVILGRTVEVKKAIPRSGQQHHYLPQTRGTSICISHDSSSDHVRTKKIFVGGLSASISEEEFKKYFERFGRITDVVVMQDSVTQRPRGFGFITFDSEDSVENVMLKNFHDLNGRQVEVKRAVPKEGNNGGDSFHKLRYRSGRGAPKSSPHYNPKYMLPGFAPLSWYSSDGVYFYGLNTYSSWYPVGGYWGNGHAVPSDALRNYWYQPMVTSPQACQVPYANALPSPAHEW 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1791 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Glsi08g1791 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Glsi08g1791 297 SUPERFAMILY RNA-binding domain, RBD 3 88 IPR035979 GO:0003676
Glsi08g1791 297 Gene3D - 110 198 IPR012677 -
Glsi08g1791 297 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 244 - -
Glsi08g1791 297 CDD RRM2_Hrp1p 114 191 - -
Glsi08g1791 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Glsi08g1791 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Glsi08g1791 297 FunFam RNA-binding protein 1 109 199 - -
Glsi08g1791 297 Gene3D - 4 88 IPR012677 -
Glsi08g1791 297 SUPERFAMILY RNA-binding domain, RBD 107 210 IPR035979 GO:0003676
Glsi08g1791 297 SMART rrm1_1 114 186 IPR000504 GO:0003723
Glsi08g1791 297 SMART rrm1_1 7 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1791 Glsi-ChrGlsi08 12718447 12719586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1791 8 251 Eukaryotic Initiation Factors Gene Family AT2G36660 24.806 5.63e-14 70.1