Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1789 ATGAATGACAATAACAACGATGGCAATAATCATAACTGGCTGGGGTTCTCCCTTTCACCCCACATGAAAATGGAGGTTACTTATGGTCGTCCTCCTCATCATCAGTGCCATAATCGAGCCCAAGCTTCTGCTACTGCTGTTTCTAACACTGTTCCCACAGCCTTCTACCCGTCCCCTTCTCATCTAAGCAGCTCTGGAATCTGTTACAGTGTTGGGGAAAACAGTACCTTTCATTCTCCTTTGGCGGCAATGCCACTGAAGTCTGATGGGTCACTCTGTATAATGGAAGCTCTCAGTCTCAGTGGATCACAAGCGCATGGAATGGTGCCGAGTTCGTCTCCGAAACTGGAGGACTTTCTAGGTGGTGCAGGTATAGGAACTCACGGAAGGGAGGCGATGGGTCTCAGCCTAGATAGCATCTACTATAGCCAAAGCCATAATGCAGGACCTCAAACTAACAGAGATCATTCACCGCACCTTCTTTCAGAACCCTTGAGCCAACAAGGGCACACTACGGTCCAATCCCATCCATATTATTCTGGACTTGTTTGCCATGGGATTTATCAAGCACCACTGGGAGTAGCCAAGAACACCCATGTCACAGTTTGCGACTCCCAAGTGCCTCAAACGGTAGAGTCGGGCATTGGTGGCGTGCAAATGAATGGCAGCGTGGGTGAGGGTGGTGGAGCTTCTGGGTCTGTTGGTACAATCTCACCCTCTGGGACGGACTCTGTAGGCATGGAAACCAAAAAGAGAGTGTCTGGGAAGTTGGGCCACAAGCAGCCTGTGCATAGGAAATCTATTGACACATTCGGGCAGAGAACGTCGCAGTATAGAGGCGTGACCAGACACAGATGGACTGGTAGATATGAGGCGCATTTGTGGGATAACAGTTGCAAGAAGGAAGGGCAGACCAGGAAAGGAAGACAAGGGGGGTATGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTTGCGGCTCTTAAGTACTGGGGACCTTCAACGCATATAAACTTTCCGGTATATTTCAAGTGCCTTACTGTCCTTGAATCGTATACTTGCACTCAAGAGGAAGCAGCCGAAGCATATGACATAGCTGCAATAAAATTTCGTGGGGCGAATGCGGTCACTAATTTTGACATATCTAGATACGATGTTGACAGGATCATGGCCAGCAAGACGCTGCTTGCAGGGGAGCTGGCGAGACGAAACAAAGATAATGAACCAAGAACTGAGGCCATTGAGTATAATGCTAGAAACCAGATAAATGGGGAGAATGAAAATGGTTCAGACTGGAAGATGATTATGTATCAGTCTTCACATGAAGAATCAAATAGCTGTGACCAGAATACCATGAATAGCGGAAATTATAGAAATTCTGCTTTCTCTAAGGCCCTACAAGATCTCATTGGTTCTAGCCAGTCCATGCTGGACGAGTCTACCAAGATAGGGACTCATTTTTCAAATCCATCCTCGCTGGTGACCAGTTTAAGCAGCTCAAGAGAAGGCAGTCCTGATAGAACTGGTCCCACGCTACTCTTCCCAAAGCCCCCAATGGAATCAAAGATGGTTAGCCCCATTGGTGCTGGCGTTAGTTCTTGGTTTCCCTCTCCAGCAGCTCAACTGAGGCCAGCTGCTGCAATGTCAATGTCTCACTTGCCACTGTTTGCTGCATGGAATGATCCCTAG 1689 0.479 MNDNNNDGNNHNWLGFSLSPHMKMEVTYGRPPHHQCHNRAQASATAVSNTVPTAFYPSPSHLSSSGICYSVGENSTFHSPLAAMPLKSDGSLCIMEALSLSGSQAHGMVPSSSPKLEDFLGGAGIGTHGREAMGLSLDSIYYSQSHNAGPQTNRDHSPHLLSEPLSQQGHTTVQSHPYYSGLVCHGIYQAPLGVAKNTHVTVCDSQVPQTVESGIGGVQMNGSVGEGGGASGSVGTISPSGTDSVGMETKKRVSGKLGHKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPVYFKCLTVLESYTCTQEEAAEAYDIAAIKFRGANAVTNFDISRYDVDRIMASKTLLAGELARRNKDNEPRTEAIEYNARNQINGENENGSDWKMIMYQSSHEESNSCDQNTMNSGNYRNSAFSKALQDLIGSSQSMLDESTKIGTHFSNPSSLVTSLSSSREGSPDRTGPTLLFPKPPMESKMVSPIGAGVSSWFPSPAAQLRPAAAMSMSHLPLFAAWNDP 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1789 562 ProSiteProfiles AP2/ERF domain profile. 277 340 IPR001471 GO:0003700|GO:0006355
Glsi08g1789 562 SUPERFAMILY DNA-binding domain 276 341 IPR016177 GO:0003677
Glsi08g1789 562 ProSiteProfiles AP2/ERF domain profile. 355 380 IPR001471 GO:0003700|GO:0006355
Glsi08g1789 562 MobiDBLite consensus disorder prediction 487 506 - -
Glsi08g1789 562 CDD AP2 276 341 IPR001471 GO:0003700|GO:0006355
Glsi08g1789 562 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 355 450 - -
Glsi08g1789 562 MobiDBLite consensus disorder prediction 487 518 - -
Glsi08g1789 562 MobiDBLite consensus disorder prediction 233 247 - -
Glsi08g1789 562 SMART rav1_2 347 386 IPR001471 GO:0003700|GO:0006355
Glsi08g1789 562 SMART rav1_2 277 346 IPR001471 GO:0003700|GO:0006355
Glsi08g1789 562 MobiDBLite consensus disorder prediction 145 172 - -
Glsi08g1789 562 MobiDBLite consensus disorder prediction 228 247 - -
Glsi08g1789 562 Pfam AP2 domain 277 332 IPR001471 GO:0003700|GO:0006355
Glsi08g1789 562 Gene3D AP2/ERF domain 345 382 IPR036955 GO:0003700|GO:0006355
Glsi08g1789 562 Gene3D AP2/ERF domain 276 342 IPR036955 GO:0003700|GO:0006355
Glsi08g1789 562 FunFam AP2-like ethylene-responsive transcription factor ANT 276 342 - -
Glsi08g1789 562 PRINTS Ethylene responsive element binding protein signature 278 289 IPR001471 GO:0003700|GO:0006355
Glsi08g1789 562 PRINTS Ethylene responsive element binding protein signature 362 382 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1789 Glsi-ChrGlsi08 12708763 12711799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1789 2 406 AP2-EREBP Transcription Factor Family AT4G37750 40.717 3.43e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g1789 AP2 3.7e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0458 10 2933775 2936964 Glsi08g1789 08 12708763 12711799 CCT
Glsi08g1789 08 12708763 12711799 Glsi08g1789 08 12708763 12711799 ECH