Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1788 ATGGATGGTCATGATAATGCCATGGGGTTTCAACATAGAAACGAGAGCATTCTGAATGTTTCAGAAATGGCAGTTGGTTCTTTTTCGATGGCTAAGCCTTCAGATTTGTCCAATCCTTTTCTTGGTTCTTCTACTTGGGATCCACTTGTTTCGTTAAGTCAGACTCAGAGCTTTGGAAGCTCTTCAATGCTGTCGCATTGTGAGTTTGCTAATTCATCTTACCCGATTGTTTTGGAAAATCAGGGAATGAGTAGCACCTCTCACCCGGTTCAATATATGTCTGACTTTCCCTCGTATGGAAGTGGGAGTTTCTCAGAAATGGTTGGTTCCTTTGGCCAACCTGGATGTGGTGATATAGCTAGTACAGGGTGTGGACCAACTTATAATCCAAACAATGGGGCAGGCATCAAAAGGGCTCCAACAAATGGTGCACAATCTCAGGGTGAGGATTCCACTCTTGAAGAGGGAGCCACAGCATATGCACCTAACGGAAGTAGAAGAAAACGGGGTCTTGATTATAATTCTTCGTTCAGTCCAGATAAGAGCCCAGAAGGGGAAGCACTGAAGGATTCTTCTGGCAAGAGCTCAGATGGTGTGAAAGAACAAGATGAAAAGAAACTAAAAATAGATCAAAATACGAGTGCAGATTTGCGTGGTAAGCAAGCCAAAGACAACTCTCGCAGTGGGGAGCCTCCCAAAGAAAATTTCATTCATGTGAGAGCTCGAAGAGGTCAAGCTACAAACAGTCATAGCCTTGCAGAAAGGGTAAGAAGAGAAAAGATAAGTGAGCGAATGAGGTTACTTCAGGAACTAGTTCCCGGATGCAACAAGATAACTGGCAAAGCAGTAATGCTTGATGAGATTATTAACTATGTGCAATCCCTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACTGTGAACCCCGAACTGGATTTTGATGTAGAGCGGATCTTATCCAAAGACTCCCGCATTGGACATGGAGCAATAGGGGGATACGGTGCAGGAATCAATCACCCATTCCCCAGTGGAAGTTTTCAGGGAAACCTGGCAGGCATACCTAACACATCCTCACTATTCCCTCATTTGCCTAAGAGTGTGTTGGAGCAAGAGTTTCAAAGCTTATATGGAATGGGATACGATTCTAGTACAGCTCTTGAAAATTTGGGAACCAATGGGCGGTTGAAAACAGAGTTATAA 1206 0.4386 MDGHDNAMGFQHRNESILNVSEMAVGSFSMAKPSDLSNPFLGSSTWDPLVSLSQTQSFGSSSMLSHCEFANSSYPIVLENQGMSSTSHPVQYMSDFPSYGSGSFSEMVGSFGQPGCGDIASTGCGPTYNPNNGAGIKRAPTNGAQSQGEDSTLEEGATAYAPNGSRRKRGLDYNSSFSPDKSPEGEALKDSSGKSSDGVKEQDEKKLKIDQNTSADLRGKQAKDNSRSGEPPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELDFDVERILSKDSRIGHGAIGGYGAGINHPFPSGSFQGNLAGIPNTSSLFPHLPKSVLEQEFQSLYGMGYDSSTALENLGTNGRLKTEL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1788 401 MobiDBLite consensus disorder prediction 134 153 - -
Glsi08g1788 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 313 IPR036638 GO:0046983
Glsi08g1788 401 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 149 351 IPR024097 GO:0006355
Glsi08g1788 401 Gene3D - 242 315 IPR036638 GO:0046983
Glsi08g1788 401 MobiDBLite consensus disorder prediction 134 255 - -
Glsi08g1788 401 Pfam Helix-loop-helix DNA-binding domain 248 296 IPR011598 GO:0046983
Glsi08g1788 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 295 IPR011598 GO:0046983
Glsi08g1788 401 MobiDBLite consensus disorder prediction 220 240 - -
Glsi08g1788 401 CDD bHLH_AtBPE_like 235 320 - -
Glsi08g1788 401 MobiDBLite consensus disorder prediction 183 213 - -
Glsi08g1788 401 SMART finulus 251 301 IPR011598 GO:0046983
Glsi08g1788 401 FunFam Basic helix-loop-helix transcription factor 242 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1788 Glsi-ChrGlsi08 12701009 12702906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1788 8 401 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.998 5.59e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi08g1788 HLH 4.1e-06 No_clan