Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1778 ATGGGGAGGGCTCCTTGCTGCGACAAAGCAAATGTGAAGAAAGGCCCTTGGTCTCCAGAAGAAGATGCCAAGCTCAAGTCCTTCATCGAACAGCATGGCACCGGGGGTAACTGGATTGCTTTGCCGCAAAAGATCGGGCTCAAGAGATGTGGCAAGAGTTGCCGTCTTAGATGGCTAAATTATCTTCGCCCTAATATCAAGCATGGGGGTTTCTCTGAAGAAGAAGACAACATTATCTGCAGCCTCTACGTTAGCATTGGAAGCAGATGGTCGGTCATCGCAGCCCAATTGCCCGGAAGAACAGATAATGACATAAAGAACTACTGGAACACAAGGCTGAAGAAGAAACTTCTGGGTAAGCACCGTAGAGGCAACAGACTTAAGCAGGAAGTGAACAGAGGGAATGGGGATTCATCGCTTCCGGAAAGTAGTTCTCATCAACAGCCATATTGGCCTCAGATGCCCGTGCTAGCACCGCTGCCTTGCTCATACCAACAAGGGCCATGTTTCAACGACCAAGATTCTATTAGAAAATTGCTTATCAAACTCGGAGGAAGATTTTCTCATGATTATCAGCCTACCCATGATGGCTTGAATTTTCAATTCCCATATGCTACTCATGATCCCTCCACTCGACCGATATATGAAGAACAAGTCAATATGGTTTCTTCCGCGGCTTGTATGAATGCTATTGACAACAGCCCAGTGCAATTACCTCAGGGGACTGGACTTAACTTGATGCAAGGAGGCAGTTTCACCCAAGCACTCGAGGCAATGGTATCTACTTATCCACGAAGTCTAGATGTAGATGGCCTGGAATTCTTATACGGGGAAGACATGATCGGTGATAAGATAGGCCCTACGAGCTGGTGTGAGACGAATTCCCTGGTTCATCCTCCGAATTATGAATGTATGCGACAAGAGACGCCAATGGAATGCGCTTTTCAAGAGCTGAGGTATCCAGGAGCGCAATAG 975 0.4718 MGRAPCCDKANVKKGPWSPEEDAKLKSFIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRRGNRLKQEVNRGNGDSSLPESSSHQQPYWPQMPVLAPLPCSYQQGPCFNDQDSIRKLLIKLGGRFSHDYQPTHDGLNFQFPYATHDPSTRPIYEEQVNMVSSAACMNAIDNSPVQLPQGTGLNLMQGGSFTQALEAMVSTYPRSLDVDGLEFLYGEDMIGDKIGPTSWCETNSLVHPPNYECMRQETPMECAFQELRYPGAQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1778 324 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Glsi08g1778 324 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Glsi08g1778 324 CDD SANT 71 113 IPR001005 -
Glsi08g1778 324 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi08g1778 324 PANTHER OS09G0431300 PROTEIN 1 163 - -
Glsi08g1778 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Glsi08g1778 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Glsi08g1778 324 FunFam Transcription factor MYB36 70 138 - -
Glsi08g1778 324 FunFam Transcription factor RAX3 7 68 - -
Glsi08g1778 324 CDD SANT 16 62 IPR001005 -
Glsi08g1778 324 Gene3D - 70 139 - -
Glsi08g1778 324 MobiDBLite consensus disorder prediction 131 149 - -
Glsi08g1778 324 Gene3D - 7 68 - -
Glsi08g1778 324 SMART sant 13 64 IPR001005 -
Glsi08g1778 324 SMART sant 67 115 IPR001005 -
Glsi08g1778 324 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Glsi08g1778 324 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Glsi08g1778 324 MobiDBLite consensus disorder prediction 120 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1778 Glsi-ChrGlsi08 12629173 12630342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1778 1 182 MYB Transcription Factor Family AT3G49690 63.590 5.33e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g1778 Myb_DNA-binding 4.8e-14 CL0123