Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1776 ATGGAGGAATATAATAACGAGGTGAGCGAAAACGGAGGTTCAAGGGCTAATTTCTTGTACTCCTCCGCCGGAGTTGGGTACGGGAGAAGGAGCAGTGGTGGATCAAGCGTAGGAAATCATCACCAGTTTCCCATCGGTACCTTTCATCTTCAATCGGGTGGATCGGAGGGCTATCAGTCCGATCAACCGCACCCTACTGTGAAAACTGAAGCCAATACCTCGCACCACACTCAGTTTTTCCCCTATCTCCAGACTATGTATCCTCAACAAGAAGGAAGCCATAGCTCTAACCAAGTGGAAGCCATTAAAGCTAAAATCATAGCTCATCCTCAGTACTCCAACCTTTTAGAAGCTTACATGAATTGCCAAAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTCTGGCTGACGCTCGGCAGGAGTTCGAGGCAAGGCAGCGATCTTCAGGTAGACCCAGGGAAACTAGCAAGGACCCAGAGCTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTATCGAGAGGAATTAACAAGGCCAGTCCAAGAGGCAATGGATTTCATGCGCAGGATAGAAACTCAGCTAAACATGCTTTCCAATACCCCCGGGCGGATCTTCACTGAAGATAAGCGGGAAAGTGTTGGTTCATCGGAAGAGGATGAAGAAGAAACAGAAATGCCAGAAGTGGATGCCCGAACTGAAGACCGTGAGCTTAAAAACCACTTGCTGAGAAAGTATAGTGGTTACTTAAGCAGCCTAAGGCAAGAGCTTTCAAAGAAAAAGAAGAAAGGAAAACTGCCTAAAGATGCTAGGCAAAAGCTACTTAGCTGGTGGGAATCACACTATAAATGGCCCTATCCTTCGGAAGTAGAGAAGGTGGCACTGGCAGAATCAACTGGATTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGCGGCACTGGAAGCCATCGGAAGACATGCAGTTTATGGTGATGGAAGGACTGCATCCACAGAACGCCACTCTCTATATGGATGCTCACTACATGGCTGATGCTCCCTACCGTCTGGGGCCTTGA 1074 0.4777 MEEYNNEVSENGGSRANFLYSSAGVGYGRRSSGGSSVGNHHQFPIGTFHLQSGGSEGYQSDQPHPTVKTEANTSHHTQFFPYLQTMYPQQEGSHSSNQVEAIKAKIIAHPQYSNLLEAYMNCQKVGAPPEVVARLADARQEFEARQRSSGRPRETSKDPELDQFMEAYYDMLVKYREELTRPVQEAMDFMRRIETQLNMLSNTPGRIFTEDKRESVGSSEEDEEETEMPEVDARTEDRELKNHLLRKYSGYLSSLRQELSKKKKKGKLPKDARQKLLSWWESHYKWPYPSEVEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMEGLHPQNATLYMDAHYMADAPYRLGP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1776 357 SUPERFAMILY Homeodomain-like 260 332 IPR009057 -
Glsi08g1776 357 CDD homeodomain 271 323 IPR001356 GO:0003677
Glsi08g1776 357 FunFam Homeobox protein knotted-1-like 2 264 326 - -
Glsi08g1776 357 ProSiteProfiles ELK domain profile. 239 259 IPR005539 GO:0003677
Glsi08g1776 357 Pfam ELK domain 239 260 IPR005539 GO:0003677
Glsi08g1776 357 Gene3D - 264 326 - -
Glsi08g1776 357 MobiDBLite consensus disorder prediction 29 71 - -
Glsi08g1776 357 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 329 - -
Glsi08g1776 357 SMART ELK_2 239 260 IPR005539 GO:0003677
Glsi08g1776 357 MobiDBLite consensus disorder prediction 209 233 - -
Glsi08g1776 357 SMART KNOX2_2 151 202 IPR005541 GO:0003677|GO:0005634
Glsi08g1776 357 ProSitePatterns 'Homeobox' domain signature. 297 320 IPR017970 GO:0000981|GO:0006355
Glsi08g1776 357 ProSiteProfiles 'Homeobox' domain profile. 259 322 IPR001356 GO:0003677
Glsi08g1776 357 Pfam Homeobox KN domain 279 318 IPR008422 GO:0003677|GO:0006355
Glsi08g1776 357 SMART KNOX1_2 100 144 IPR005540 GO:0003677|GO:0005634
Glsi08g1776 357 SMART HOX_1 261 326 IPR001356 GO:0003677
Glsi08g1776 357 Pfam KNOX1 domain 101 143 IPR005540 GO:0003677|GO:0005634
Glsi08g1776 357 Pfam KNOX2 domain 155 200 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1776 Glsi-ChrGlsi08 12616935 12620345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1776 61 357 Homeobox Transcription Factor Family AT4G08150 66.879 4.96e-140 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi08g1776 KNOX2 1e-24 No_clan