Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1775 ATGGGAGGGAAATGTAATGGTGCCCATGTGGGAAGTGGGGTCCAGAGGAGGGTGAGAACCTCGAGATATTTAGAGGCATGGATGGGACTGGTAGTGGACCCAATCATCAGCATCTTCAAGTGGGCTTGTTTGCATGTCCTTTGCCTCTTCAGCAGTTTCCAAAATCCACCATCAACTGAAGCCCGTCCAATGGTAATGGACCAAACACTGCCCACCCCCAATTTCCCCCAGGCCCAGAATGAGAAGCTTTTTCTTGAATCCAAAACTGTCAACACAACAAAAGAGAGGAGCGTAAAATCCGGCCCAATACACTCCCAACTCTCAAAACGTTTTTTGGGACAAACTCTTCGTATTGATTTGAGCAACACGTGGCAAAGATATGAACGATATTTTCTAAAGGCACAATTGGACTCAACCTCGGTTAAACAAATCCAGGAACCCGCCTCAGTTGCTCGCTGCACTGCTCGCCCTTCCTTTTGTGCAGTTTATATTTCAGAGTTCAGACACACAAACACTCCCTCCATTTGGTCATGCGAAGACGACGATAAATCCTCAAAAGTCAAAACAATGATGATCGGAGAACCAAAACGCTTGTTCCCTACTCTTCAAATTTCTGATTGGGAATGGGATCCATCAGATGATTCACCGGGAGCGCCACCACCCTCCCCATTCCCCATCAAATTCAACGGCAATGCCGCTGGCTGCGATTACTCTCATTCCATCGACTCCTCCGTCGTCCTCCAATGTTCTCTTTCCCATGATTTCACCCCTGTCGACTTGGACACACTCGGCGAAGAATTCCACATGCCCATTGGTGCTTTCTCCGGCGATCATTTCCGTATGTTCGAGTTTAAGATCCGGAAGTGTCCACGTGGCAGGTCACATGATTGGACAGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCTCGCCGAAGGGACCCTCGGAAATTCCACTACTCCGGTACCGCCTGCCCCGAGTTTCGCCAAGGGAATTGCAAGAAAGGTGACTCGTGCGAGTTTGCTCACGGAGTCTTCGAATGTTGGCTTCACCCAACTCGTTACAGGACTCAACTCTGCAAAGATTTAACCAATTGTCGCCGCCGAGTGTGTTTCTTTGCTCACACTCCGGAGCAACTGCGTGTCCTGACTCCTGGGTCTGGCGAATCATCTGACGGGTCGCCGATTCGTTGGAGTAAAACTTCATTTATTTCATCGCCTACTTCAGTCCTTAACTTATCGCCGATTTCTCCGCTGCCTGATTCATCACCCGCGTTGCCGGGCAACCCCCAATATGGCCGTGGATCATTCAATGCGGTCGCGGAATTAGTTACTTCAATGCGTAATGTTCAACTTGATAAGGCGCCTTCAACCCGGGGTTCCAAGATGAGTTCTGGATTTGGCTCTCCCCCAACTCCACGTCCCGGGTTTTTTAGCCTTCCTTCAACCCCAACCTGGGCAGAAAGTCCAGCGGACTTTTGGGATCGGAGCCACGAAGAAGAGCCTCCCATGGAGAGGGTGGAATCGGGTAGAGACCTTAGAGCCAAAATATACGCCAAGCTGAGCAAGGAAAACTCATTTGGGGTAAGCGAGACGGGCGTTTCAGCTCCTGATTTTGGATGGGTCTCAGAACTGGTGAAGTGA 1641 0.504 MGGKCNGAHVGSGVQRRVRTSRYLEAWMGLVVDPIISIFKWACLHVLCLFSSFQNPPSTEARPMVMDQTLPTPNFPQAQNEKLFLESKTVNTTKERSVKSGPIHSQLSKRFLGQTLRIDLSNTWQRYERYFLKAQLDSTSVKQIQEPASVARCTARPSFCAVYISEFRHTNTPSIWSCEDDDKSSKVKTMMIGEPKRLFPTLQISDWEWDPSDDSPGAPPPSPFPIKFNGNAAGCDYSHSIDSSVVLQCSLSHDFTPVDLDTLGEEFHMPIGAFSGDHFRMFEFKIRKCPRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRQGNCKKGDSCEFAHGVFECWLHPTRYRTQLCKDLTNCRRRVCFFAHTPEQLRVLTPGSGESSDGSPIRWSKTSFISSPTSVLNLSPISPLPDSSPALPGNPQYGRGSFNAVAELVTSMRNVQLDKAPSTRGSKMSSGFGSPPTPRPGFFSLPSTPTWAESPADFWDRSHEEEPPMERVESGRDLRAKIYAKLSKENSFGVSETGVSAPDFGWVSELVK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1775 546 MobiDBLite consensus disorder prediction 452 481 - -
Glsi08g1775 546 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 343 IPR000571 GO:0046872
Glsi08g1775 546 MobiDBLite consensus disorder prediction 452 467 - -
Glsi08g1775 546 Gene3D - 318 381 - -
Glsi08g1775 546 ProSiteProfiles Zinc finger C3H1-type profile. 319 345 IPR000571 GO:0046872
Glsi08g1775 546 PANTHER UNKEMPT FAMILY MEMBER 271 546 IPR045234 -
Glsi08g1775 546 SMART c3hfinal6 318 344 IPR000571 GO:0046872
Glsi08g1775 546 SMART c3hfinal6 353 376 IPR000571 GO:0046872
Glsi08g1775 546 FunFam Zinc finger CCCH domain-containing protein 66 276 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1775 Glsi-ChrGlsi08 12607303 12610302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1775 272 417 C2H2 Transcription Factor Family AT5G12850 59.589 8.45e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi08g1775 zf-CCCH 8.8e-06 CL0537