Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1760 ATGTGGATGGAGAACGATACATTCAGTGCTCCAATGGACATGGGTGGCCGAAATTCTAATGTCATGGATGAAACCCCACTACATCCAACACCGAACTCGCTCGTTCAGTGCGATTCATTTGACCTTAATCACCAAACCGCTGGAGGAATTTCTATGCTTGTCGGAGTTCAAGGCGAACCTATAAGTAATGTCGATGCAAATGTACACTTGATCGATCCTTCAAGTGTTGTCCATTCTAATTTGTTGGACAGCTGTGAGTTTCAAGTGCAAACAGCTGGAGGAATGCCTATTACTCCTGCTTCACTTGATCCTAAATTTGGTTTTGACGGAAATTTAGAGAAATCACCAGCTTTGCCTCCTTTAGAAGCATTGGGACCATATATCTTTGAAAATTGGCAGGATAGTTCAAACCATTTCCTTGGGGACAATAGCTGCCATGAAATACCTGGTAATGCCAACGAGTTTCCAAAAGCTCCAGAGGTTGATGGAACTGGGTTCCAGTCTCATTTATCCACAGCAAACCTGGATTCAAATGGATGGGCATCGCCAAATGTTGCAAACTTGACCACTTGGTCTAATTTTAGTAATGAGCTTGTATTAAGTCTTGCAACATCTCCCACCGTAGGTGAGTGCTCGGAGGTGAATTGTTCTGATTTTACCCATTGCTTGAATAAAACAAGGTCGCTTTCTATGAGTTTGAATTCCAATAAACATGTGCATTTTTCACAAGCTATACTGGGATCAAGATATCTTATTGGAATTCAAGAGATACTTGCTCAAATGGCAAGGTATTCCCTTGAAAATCTAGAACAGATAAACTGTTCATCTAATGATATTAGAGCAGGAGGAAATGCGGTAACCTCAGTTTTCCCACCCAAGAGAGGGATAGCGATGGGTCACAATGCAAATTCTAAGTTTGAAGTTCACACGGAAGCTCCGTTGCAAAGACATGCAGCTGAATCGAATAAAACCGAACTGCTCACACTTGTACAACTGGTGGACAATCGATATAGTCAATGTTTGAATGAGATACACACGGTCGTATCTGCATTCCATGCTGCTACAGAGTTGGACCCACAGGTACATGCACATTTTGCCCTTCAAACAATCTCACTCTTATACAAGGACTTGCGAGACAGGATTTGCAATTACATTCTTGCCATGGGAGCGACTTTTAACAACCCATGCACAGAAGACATTGAAAGATCTGTTCAAACTTCATTCATCCAAAAGCAATGGGCTCTCCAACAGTTGAAAAGAACAGACCATCAGTTATGGAGGCCCCAAAGAGGCTTGCCAGAAAAATCTGTCTGTGTCTTGCGGTCTTGGATGTTTCAGAATTTTCTCCATCCGTATCCCAAAGATGCGGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACGAGAAGCCAGGTATCCAACTGGTTTATAAATGCTCGCGTTCGGCTATGGAAACCTATGATTGAGGAAATGTATGCTGAAATGAATAAAAGAAAGGCTTGTCGAAATGAAAGAGGAACGGAGAGCAGCCATAGAAGCAGGCTAAGCATGAGCAATCAAAATTTCAACATGAGATGA 1578 0.4214 MWMENDTFSAPMDMGGRNSNVMDETPLHPTPNSLVQCDSFDLNHQTAGGISMLVGVQGEPISNVDANVHLIDPSSVVHSNLLDSCEFQVQTAGGMPITPASLDPKFGFDGNLEKSPALPPLEALGPYIFENWQDSSNHFLGDNSCHEIPGNANEFPKAPEVDGTGFQSHLSTANLDSNGWASPNVANLTTWSNFSNELVLSLATSPTVGECSEVNCSDFTHCLNKTRSLSMSLNSNKHVHFSQAILGSRYLIGIQEILAQMARYSLENLEQINCSSNDIRAGGNAVTSVFPPKRGIAMGHNANSKFEVHTEAPLQRHAAESNKTELLTLVQLVDNRYSQCLNEIHTVVSAFHAATELDPQVHAHFALQTISLLYKDLRDRICNYILAMGATFNNPCTEDIERSVQTSFIQKQWALQQLKRTDHQLWRPQRGLPEKSVCVLRSWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNERGTESSHRSRLSMSNQNFNMR 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1760 525 Gene3D - 429 508 - -
Glsi08g1760 525 Pfam Homeobox KN domain 443 482 IPR008422 GO:0003677|GO:0006355
Glsi08g1760 525 SMART HOX_1 426 490 IPR001356 GO:0003677
Glsi08g1760 525 Pfam Associated with HOX 245 381 IPR006563 -
Glsi08g1760 525 ProSiteProfiles 'Homeobox' domain profile. 445 486 IPR001356 GO:0003677
Glsi08g1760 525 Coils Coil 524 525 - -
Glsi08g1760 525 CDD homeodomain 426 487 IPR001356 GO:0003677
Glsi08g1760 525 MobiDBLite consensus disorder prediction 499 525 - -
Glsi08g1760 525 SMART prehox3 239 383 IPR006563 -
Glsi08g1760 525 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 183 510 - -
Glsi08g1760 525 SUPERFAMILY Homeodomain-like 427 495 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1760 Glsi-ChrGlsi08 12516464 12518507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1760 196 499 Homeobox Transcription Factor Family AT4G32980 56.536 9.13e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi08g1760 POX 3.6e-25 No_clan