Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1752 ATGCCCCGAATGAAGCATCTACTAAGAAAGCTTCACATCGGCGGTGGTATCAATGAACATCAGAGATTGCCTGAGACTCCCCCCGTGCTCAGCCCCACCCCCAATCTCACTCTGTCTTCTTCTACTTTGGACTCGCCTACAATGGCCACCGTCGCCCCAAATGAATCGGTTGCTGATCGGACGCCTATTGATGATACCGCTGGTATTTGTGGTGATAACGGAGTGGATTTTAATCTTTTGGAGGAGGAGTTTCAGATGCAGTTGGCCTTAGCAATTAGCGCTTCCGATCCTGATGTGCGCAAGGACCCCGATTCTGCTCAGATGGATGCCGCTAAGCAGATTAGCCTCGGGTCCGCAGCTTCTGTCACTGATACAGAGGGCCTCGTCCAGTTTCAATCGCTTCGTTATTGGAACTACAATGTCATTGATTATGAAGAGAAAGTGATGGATGGATTTTATGATGTTTATGGTATCACCTCAAATTTAGTTGAACGAGGAAAGATGCCATTGTTGATGGATCTACAAACTTCATCCATTTCAGAAAATCTTGATTGTGAAGTGATTTTGGTGAACCGTATAGTTGATATTGAGCTGAAGCAGTTTGAGAAAAAAGCCTGCACATTATCCATGGACTGTTGCTTTCCTGGACAAGGACTATTTAGTGGCTTACTACAGAAACTCGCTGACATTGTTGTTAATAGAATGGGTGGGCCAGTTGGTGATGCTGATGAAATGTTGAAAAGGTGGACCATCAGGAGCTATGAGTTAAGAAGTTCTTTAAAAACTGCTGTTCTTCCCCTTGGCTGTCTTGATGTTGGACTTTCACGTCACCGAGCCCTGCTCTTTAAGGTACTTGCTGATAGCATTAATGTTCCCTGTATGCTGGTCAAAGGGAGCTATTACACTGGAACTGATGATGGAGCTGTGAATTTGATTAAAGCTGATGATGGAAGTGAATACATTATAGATCTGATGGGTGCTCCCGGTGCCCTTATTCCTGCTGAAGTCCCCAGCAGTCAGCTCCGAAACTATAGTTTTGCTCCAAGCGGTTGTGCAGAGATTGTGGAAGTACCTAACAACAAACATTTGGTATTTGATGATGGAACTGGAATGCTGGCAGTTTCATCTGATCTTGGAAGAATTTCAACAATTTGCAACGCTAAGTCAGAAGAATTATCAAATTTTGGCAGTCAAATGAAACCAGAGGAAAGGGATTGTGTTGGGATAAATCAAACAGAGAGATTTGAACATGATTTGGGGAATCTTCTTCAGTCACTGCATAAATCACATGAAAGCTCATCACATACAGAAGCTTCGCCTGCAGAAAAGATGCAAGTAAAAAATGTCTCCAAATATGTCCTCAGTGCAGCAAAAGACCCTGAATTTGCTCAAAAGTTACGCGCTGTTCTATTAGAGAGTGGTGCACTACCTCCTCCTGATCTCTTTTTACATATTAATCCACAAGATAAAGGTGAATTTAAGGTAAAAGTTGTTGATGATTCTGGTCAAGCTGATCCAGACAGGTTGTTATCAAGCTATGAGAAGTCTGTCAAACCCCCTCAAGGGGGGTGCTCTGCCAGTGATATTAGATTAAGTCAATATACTAATCAATTATCTGAACGGCAAAAAGAAATGCAGATAGATGTCCTTAGCTCTTACAATTCTGCACCGTGTGATAATACAGGGAAGGGGTTAGTGGCTGTTTGTAATGGATTTAAAGAATTGAAGAAAATTGATGCCATAATTGTAAATAGCGTTCATGTCAACCCTCTTCAGACGCACAAAGAGCAATTTCTTGAGTCATCCTTGCCCAAGGCAGCGGTGCCTTGCAAAAGACAAATTGGGGTTAACTTTGTCTATGATGATGATGATGATGAAGATGGTCTTAATAATAAGGTTGGAGGGACTTCTAATAACATTGAATTGGGGAAAGATTCTGCAATTCAATTATATGAAATGGCTAATAAAGAGCGTATTCTATATGATGGTAAAATGGAGAAAATTAATGCAGTACTGGGGGAGAGCACAGAATGGGAAATTCAATGGGAGGATCTTCACATTGGTGAGCGTATTGGTATTGGTTCTTATGGGGAGGTTTACCATGCTGACTTGAAAGGCACTGAAGTTGCTGTGAAGAAGTTTCTAGACCAAGATTTCTCTGGTGATGCATTGACTCAGTTCAAATCTGAAGTTGAGATCATGTTGAGGCTGCGGCATCCTAATGTTGTGCTCTTCATGGGAGCAATTACTCGTCCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCTAGAGGGAGTTTATATAGGCTATTGCATCGTCCCAATTTTCAACTTGATGAGAAGAGGCGGATGCGTATGGCCCTTGATGTGGCTAAGGGAATGAATTACTTGCACACAAGCCATCCTCCCATTGTCCATCGAGATTTAAAGTCTCCAAATCTTCTTGTTGACAAACATTGGGTTGTTAAGGTCTGTGATTTTGGTTTGTCACGCATGAAGCACCATACTTATTTGTCTTCAAAGTCTACTGCTGGAACGCCTGAGTGGATGGCACCAGAAGTCTTAAGAAACGAACCAGCCAATGAGAAATGTGATGTATATAGCTTTGGTGTGATTTTGTGGGAGTTGGCTACCACAAAGATCCCGTGGAAAGGGTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTTCAAAATAGACGGCTTGAAATTCCAGATGACGTTGATCCAGCTGTGGCACAAATAATACATGATTGTTGGCAAATGGAGCCACACTTGCGGCCATCATTCTCACAGCTCATGTCTCGGCTCCGTCATCTTCATCATCTGGTTGTTAGAAAAATGAGCTTAACGCATTAA 2859 0.425 MPRMKHLLRKLHIGGGINEHQRLPETPPVLSPTPNLTLSSSTLDSPTMATVAPNESVADRTPIDDTAGICGDNGVDFNLLEEEFQMQLALAISASDPDVRKDPDSAQMDAAKQISLGSAASVTDTEGLVQFQSLRYWNYNVIDYEEKVMDGFYDVYGITSNLVERGKMPLLMDLQTSSISENLDCEVILVNRIVDIELKQFEKKACTLSMDCCFPGQGLFSGLLQKLADIVVNRMGGPVGDADEMLKRWTIRSYELRSSLKTAVLPLGCLDVGLSRHRALLFKVLADSINVPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDLMGAPGALIPAEVPSSQLRNYSFAPSGCAEIVEVPNNKHLVFDDGTGMLAVSSDLGRISTICNAKSEELSNFGSQMKPEERDCVGINQTERFEHDLGNLLQSLHKSHESSSHTEASPAEKMQVKNVSKYVLSAAKDPEFAQKLRAVLLESGALPPPDLFLHINPQDKGEFKVKVVDDSGQADPDRLLSSYEKSVKPPQGGCSASDIRLSQYTNQLSERQKEMQIDVLSSYNSAPCDNTGKGLVAVCNGFKELKKIDAIIVNSVHVNPLQTHKEQFLESSLPKAAVPCKRQIGVNFVYDDDDDEDGLNNKVGGTSNNIELGKDSAIQLYEMANKERILYDGKMEKINAVLGESTEWEIQWEDLHIGERIGIGSYGEVYHADLKGTEVAVKKFLDQDFSGDALTQFKSEVEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYRLLHRPNFQLDEKRRMRMALDVAKGMNYLHTSHPPIVHRDLKSPNLLVDKHWVVKVCDFGLSRMKHHTYLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELATTKIPWKGLNPMQVVGAVGFQNRRLEIPDDVDPAVAQIIHDCWQMEPHLRPSFSQLMSRLRHLHHLVVRKMSLTH 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1752 952 ProSitePatterns Protein kinases ATP-binding region signature. 691 713 IPR017441 GO:0005524
Glsi08g1752 952 CDD STKc_MAP3K-like 691 937 - -
Glsi08g1752 952 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 152 942 - -
Glsi08g1752 952 Gene3D Phosphorylase Kinase; domain 1 678 762 - -
Glsi08g1752 952 Pfam Ethylene-responsive protein kinase Le-CTR1 130 332 - -
Glsi08g1752 952 Pfam Protein tyrosine and serine/threonine kinase 685 937 IPR001245 GO:0004672|GO:0006468
Glsi08g1752 952 Gene3D Transferase(Phosphotransferase) domain 1 764 948 - -
Glsi08g1752 952 SUPERFAMILY Protein kinase-like (PK-like) 672 936 IPR011009 -
Glsi08g1752 952 PRINTS Tyrosine kinase catalytic domain signature 759 772 IPR001245 GO:0004672|GO:0006468
Glsi08g1752 952 PRINTS Tyrosine kinase catalytic domain signature 845 855 IPR001245 GO:0004672|GO:0006468
Glsi08g1752 952 PRINTS Tyrosine kinase catalytic domain signature 908 930 IPR001245 GO:0004672|GO:0006468
Glsi08g1752 952 PRINTS Tyrosine kinase catalytic domain signature 864 886 IPR001245 GO:0004672|GO:0006468
Glsi08g1752 952 PRINTS Tyrosine kinase catalytic domain signature 798 816 IPR001245 GO:0004672|GO:0006468
Glsi08g1752 952 ProSiteProfiles Protein kinase domain profile. 685 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1752 952 FunFam Serine/threonine-protein kinase isoform 1 675 763 - -
Glsi08g1752 952 SMART serkin_6 685 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1752 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Glsi08g1752 952 FunFam Serine/threonine-protein kinase CTR1 764 947 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1752 Glsi-ChrGlsi08 12465004 12474545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1752 596 945 MAP Kinase Kinase Kinase AT5G11850 73.714 3.14e-178 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Glsi08g1752 PK_Tyr_Ser-Thr 6.3e-66 CL0016