Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1742 ATGGACGGAATAAGAGTGAAAGAGGAAGAAACAGTAACGTGTGCAGCTGGCTCATCATCTTCTTCGTCTTCCAGCTTCTCCCCCCAGCCAATGGAAGGGCTGCACGAAATGGGGCCACCTCCGTTTCTGACCAAGACCTTTGAAATGGTGGAAGACCCATCCACGGACTCTATTGTTTCTTGGAGCATAGCTCGTAACAGCTTCATTGTCTGGGACTCTCATAAGTTCTCCACCACCATTCTTCCTCGGTACTTCAAGCATAGCAATTTCTCCAGCTTCATTCGCCAGCTCAATACCTATGGTTTTAGAAAAGTTGATCCCGATCGATGGGAATTCGCAAACGAAGGCTTTTTGGGAGGACAGAGGCACTTATTGAAGACCATCAAGAGAAGAAGGAATGTATCACAGGGTATGCAACCGCATGGAGGAGGTGCTTGTGTTGAACTGGGGCAATATGGATTGGAAGGTAAGCTTGACAGGTTGAGAAGAGACAGGACCGTGTTGATGGCAGAAATTGTGAGGTTGAGGCAGCAGCAGCAGAACTCACGCGAGCAATTGGTTTCAATGGAGGCAAGATTGCAAACCACGGAGAAGAAACAGCAACAGATACTCACCTTCCTTGCTAAAGCACTGAACAACTCATCTTTTGTACAGCAGTTTGTCCATAGAAACGCTCAGAACAGAGAATTACAGGGTGTTAAGATTAGGCGAAAGCGGAGACTTACAGCCAGCCCAAGTTTGGAGAATTTTCAAGAAGATCCTGCAACGATGGCAGTGCCTAGTGTACCAGTGGTGGAGTATCCCGGCCAAGAACAAAAAGAATTGGGCACGATGGAGCCTGAGATAGAGACCTTTTTCTCGTCTGTTCATGATGACGAATCAAGCAGTGATATGAAAGACCCAGTATCAAGTTCATTTCCAACAGCTAGTGGGAGCAATTTGGGTTCAGTCAGTGACTCAATCTGGGAGAACTTGCTGAACCAAGACTTAGTTTCTGGGAATCCTGAGGAGGAAGTTATAATTGGTGATTATTCCCAAAGTGATGCGGCTGTGGAAGACTTGGTAGCAAAGCCCGGTGACTGGGCTGAGGATTTGAGGGACCTTGTGGATCAAATGGGTTATCTAGGTTTGGTCTCTGCAACTGCATCCCCATTGCATTACGGTGCTGGGAAGGTGGTAGTTGCAGAAGGGGCCAAAACAGATAACGCTCTTTATCTGTATCCTTTATAA 1230 0.4691 MDGIRVKEEETVTCAAGSSSSSSSSFSPQPMEGLHEMGPPPFLTKTFEMVEDPSTDSIVSWSIARNSFIVWDSHKFSTTILPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQRHLLKTIKRRRNVSQGMQPHGGGACVELGQYGLEGKLDRLRRDRTVLMAEIVRLRQQQQNSREQLVSMEARLQTTEKKQQQILTFLAKALNNSSFVQQFVHRNAQNRELQGVKIRRKRRLTASPSLENFQEDPATMAVPSVPVVEYPGQEQKELGTMEPEIETFFSSVHDDESSSDMKDPVSSSFPTASGSNLGSVSDSIWENLLNQDLVSGNPEEEVIIGDYSQSDAAVEDLVAKPGDWAEDLRDLVDQMGYLGLVSATASPLHYGAGKVVVAEGAKTDNALYLYPL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1742 409 MobiDBLite consensus disorder prediction 1 37 - -
Glsi08g1742 409 SUPERFAMILY "Winged helix" DNA-binding domain 38 131 IPR036390 -
Glsi08g1742 409 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi08g1742 409 Coils Coil 158 199 - -
Glsi08g1742 409 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 282 IPR027725 -
Glsi08g1742 409 MobiDBLite consensus disorder prediction 289 312 - -
Glsi08g1742 409 FunFam Heat shock transcription factor 1 35 132 - -
Glsi08g1742 409 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi08g1742 409 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi08g1742 409 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi08g1742 409 SMART hsfneu3 38 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi08g1742 409 MobiDBLite consensus disorder prediction 13 30 - -
Glsi08g1742 409 Gene3D - 35 132 IPR036388 -
Glsi08g1742 409 Pfam HSF-type DNA-binding 42 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1742 Glsi-ChrGlsi08 12414761 12416566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1742 28 376 HSF AT2G26150 53.977 5.25e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi08g1742 HSF_DNA-bind 1.7e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0521 10 3291364 3292843 Glsi08g1742 08 12414761 12416566 CCT
Glsi08g1742 08 12414761 12416566 Glsi08g1742 08 12414761 12416566 ECH