Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1737 ATGCGATACGCAGTCCACTCCTGTGTGTTGGGAAGTGGCCAGCAAACTCAGTCAAAGACAGCCCTCGATGAGGGGGAGAATGGGACCGGAATTGAAGCCATGTGCCTGCATTACGCATTCAGATCTTTTGCTGGTGTGCACGCCGATACTGGTCAGATTGTTCGCTTGTTACATAGATCGATTTTTGTTGTGGGACAAATGGGCAATTCAATGCTCTTGATGCATTCTTCGCCGCCTTCAAATGGAATAAGAAATACGTGTTGTGCTTTTGCAGTCATGTCTGGGTCGGCACCGGAAGGATCACAGTTTGATACTCGTCAATATGATGCAAAGATGACTGAGTTACTTGGATCTGATGGGCAAGAAGAATTCTTTACTAGTTATGATGAAGTTTATGAAAGCTTTGATTCTATGGGATTGCAGGAGAACCTTTTGAGGGGTATTTATGCATATGGTTTCGAGAAGCCCTCTGCAATTCAGCAGAGGGGGATTGTTCCTTTCTGCAAGGGACTTGATGTAATTCAGCAAGCCCAATCTGGAACTGGAAAAACTGCTACTTTTTGCTCTGGAATTTTGCAACAGCTTGATTACAGCTTAGTCGAATGCCAGGCCCTGGTTCTTGCCCCCACTCGTGAACTTGCTCAACAAATTGAGAAGGTCATGCGAGCACTAGGGGACTATCTTGGAGTCAAGGTTCATGCTTGTGTGGGTGGGACCAGTGTTCGTGAAGATCAACGCATCCTCTCAAGTGGAGTCCATGTTGTTGTCGGTACTCCTGGTCGTGTATTTGACATGCTGCGGAGACAATCTCTGCGCCCTGATTATATTAAAATGTTTGTGTTGGATGAGGCAGATGAGATGCTTTCTCGGGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTGCTGCCACCAAAAATTCAGGTTGGTGTTTTCTCTGCCACAATGCCACCTGAGGCCTTGGAGATCACAAGGAAGTTCATGAACAAACCTGTGAGGATTCTGGTAAAACGTGATGAGCTTACCCTGGAAGGGATTAAGCAATTTCATGTGAATGTTGAGAAGGAGGAATGGAAGCTCGAGACACTTTGTGATCTTTATGAGACCTTGGCAATTACCCAGAGTGTCATCTTTGTCAACACCAGGCGTAAGGTAGATTGGCTGACAGACAAGATGCGAAGTCGTGATCACACTGTTTCAGCCACTCATGGAGATATGGATCAAAACACAAGGGATATCATAATGCGGGAATTCCGTTCTGGTTCCTCCCGCGTTCTAATAACCACAGATCTTTTGGCCCGTGGTATTGATGTCCAGCAAGTCTCACTTGTCATTAATTATGATCTGCCAACTCAGCCAGAGAACTATCTCCATCGAATTGGTCGTAGTGGTCGGTTTGGGAGAAAGGGTGTTGCTATCAATTTTGTGACCAGGGATGATGAAAGGATGCTGTATGACATCCAAAAGTTTTATAATGTGGTGATCGAGGAGCTGCCAGCCAATGTTGCTGATCTCCTTTGA 1521 0.455 MRYAVHSCVLGSGQQTQSKTALDEGENGTGIEAMCLHYAFRSFAGVHADTGQIVRLLHRSIFVVGQMGNSMLLMHSSPPSNGIRNTCCAFAVMSGSAPEGSQFDTRQYDAKMTELLGSDGQEEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLYDIQKFYNVVIEELPANVADLL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1737 506 Gene3D - 342 506 IPR027417 -
Glsi08g1737 506 PANTHER RNA HELICASE 116 490 - -
Glsi08g1737 506 Pfam DEAD/DEAH box helicase 158 319 IPR011545 GO:0003676|GO:0005524
Glsi08g1737 506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 506 IPR001650 -
Glsi08g1737 506 SMART ultradead3 152 349 IPR014001 -
Glsi08g1737 506 FunFam Eukaryotic initiation factor 4A-II 121 340 - -
Glsi08g1737 506 Pfam Helicase conserved C-terminal domain 359 467 IPR001650 -
Glsi08g1737 506 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 280 288 IPR000629 -
Glsi08g1737 506 FunFam Eukaryotic initiation factor 4A-III 341 506 - -
Glsi08g1737 506 CDD SF2_C_DEAD 346 476 - -
Glsi08g1737 506 Gene3D - 123 341 IPR027417 -
Glsi08g1737 506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 334 IPR014001 -
Glsi08g1737 506 CDD DEADc_EIF4A 138 335 - -
Glsi08g1737 506 SMART helicmild6 386 467 IPR001650 -
Glsi08g1737 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 487 IPR027417 -
Glsi08g1737 506 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1737 Glsi-ChrGlsi08 12388111 12395895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1737 93 506 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 769
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1737 08 12388111 12395895 Glsi08g1737 08 12388111 12395895 ECH